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The HP model of protein folding, where the chain exists in a free medium, is investigated using a parallel Monte Carlo scheme based upon Wang-Landau sampling. Expanding on the work of Wust and Landau by introducing a lesser known replica…

Biomolecules · Quantitative Biology 2016-07-13 Luke Kristopher Davis

Monte Carlo simulation using a combination of Wang Landau (WL) and Transition Matrix (TM) Monte Carlo algorithms to simulate two lattice spin models with continuous energy is described. One of the models, the one dimensional Lebwohl-Lasher…

Statistical Mechanics · Physics 2009-11-13 Shyamal Bhar , Soumen Kumar Roy

We show how the well-known Wang-Landau method can be modified to produce non-flat distributions. Through the choice of a suitable profile this can lead to an increase in efficiency for some systems. Examples for such an enhancement are…

Computational Physics · Physics 2023-12-01 Stefan Schnabel , Wolfhard Janke

We implement the Wang-Landau algorithm to sample with equal probabilities the static configurations of a model granular system. The "non-interacting rigid arch model" used is based on the description of static configurations by means of…

Soft Condensed Matter · Physics 2016-08-31 D. Slobinsky , Luis A. Pugnaloni

Performance of Wang-Landau (W-L) algorithm in two continuous spin models is tested by determining the fluctuations in energy histogram. Finite size scaling is performed on a modified XY-model using different W-L sampling schemes.…

Statistical Mechanics · Physics 2010-04-20 Suman Sinha , Soumen Kumar Roy

Potts spin systems play a fundamental role in statistical mechanics and quantum field theory, and can be studied within the spin, the Fortuin-Kasteleyn (FK) bond or the $q$-flow (loop) representation. We introduce a Loop-Cluster (LC) joint…

Statistical Mechanics · Physics 2020-11-16 Lei Zhang , Manon Michel , Eren M. Elçi , Youjin Deng

Monte Carlo simulation using the Wang-Landau algorithm has been performed in an one-dimensional Lebwohl-Lasher model. Both one-dimensional and two-dimensional random walks have been carried out. The results are compared with the exact…

Statistical Mechanics · Physics 2009-11-13 Kisor Mukhopadhyay , Nababrata Ghoshal , Soumen Kumar Roy

While statisticians are well-accustomed to performing exploratory analysis in the modeling stage of an analysis, the notion of conducting preliminary general-purpose exploratory analysis in the Monte Carlo stage (or more generally, the…

Computation · Statistics 2012-06-15 Luke Bornn , Pierre Jacob , Pierre Del Moral , Arnaud Doucet

We propose a method based on the Wang-Landau algorithm to numerically generate the spectral densities of random matrix ensembles. The method employs Dyson's log-gas formalism for random matrix eigenvalues and also enables one to…

Statistical Mechanics · Physics 2013-01-28 Santosh Kumar

The numerical simulation of strongly first-order phase transitions has remained a notoriously difficult problem even for classical systems due to the exponentially suppressed (thermal) equilibration in the vicinity of such a transition. In…

Statistical Mechanics · Physics 2010-04-14 Bela Bauer , Emanuel Gull , Simon Trebst , Matthias Troyer , David A. Huse

The development of new algorithms for simulations in physics is as important as the development of new analytical methods. In this paper, we present a comparison of the recently developed microcanonical population annealing (MCPA) algorithm…

Statistical Mechanics · Physics 2024-10-21 Vyacheslav Mozolenko , Marina Fadeeva , Lev Shchur

The density of states of continuous models is known to span many orders of magnitudes at different energies due to the small volume of phase space near the ground state. Consequently, the traditional Wang-Landau sampling which uses the same…

Statistical Mechanics · Physics 2013-11-20 Yang Wei Koh , Hwee Kuan Lee , Yutaka Okabe

Metastability is a common obstacle to performing long molecular dynamics simulations. Many numerical methods have been proposed to overcome it. One method is parallel replica dynamics, which relies on the rapid convergence of the underlying…

Numerical Analysis · Mathematics 2015-05-20 Andrew Binder , Tony Lelièvre , Gideon Simpson

We study the space spanned by the integer shifts of a bivariate Gaussian function and the problem of reconstructing any function in that space from samples scattered across the plane. We identify a large class of lattices, or more generally…

Functional Analysis · Mathematics 2024-08-07 José Luis Romero , Alexander Ulanovskii , Ilya Zlotnikov

We develop an approach to apply Wang-Landau algorithm to multicomponent alloys in semi-grand-canonical ensemble. Although the Wang-Landau algorithm has great advantages over conventional sampling methods, there are few applications to…

Materials Science · Physics 2017-10-18 Kazuhito Takeuchi , Ryohei Tanaka , Koretaka Yuge

In this communication, the convergence of the 1/t and Wang - Landau algorithms in the calculation of multidimensional numerical integrals is analyzed. Both simulation methods are applied to a wide variety of integrals without restrictions…

Statistical Mechanics · Physics 2009-11-13 R. E. Belardinelli , S. Manzi , V. D. Pereyra

Metropolis algorithm has been extensively employed for simulating a canonical ensemble and estimating macroscopic properties of a closed system at any desired temperature. A mechanical property, like energy can be calculated by averaging…

Statistical Mechanics · Physics 2017-09-28 K. P. N. Murthy

We analyze the convergence properties of the Wang-Landau algorithm. This sampling method belongs to the general class of adaptive importance sampling strategies which use the free energy along a chosen reaction coordinate as a bias. Such…

Probability · Mathematics 2013-09-27 Gersende Fort , Benjamin Jourdain , Estelle Kuhn , Tony Lelièvre , Gabriel Stoltz

In finite-size scaling analyses of Monte Carlo simulations of second-order phase transitions one often needs an extended temperature/energy range around the critical point. By combining the replica-exchange algorithm with cluster updates…

Statistical Mechanics · Physics 2011-08-20 Wolfhard Janke , Elmar Bittner

We present a simple method to obtain optimal posterior distributions and improve the quality of Bayesian inference with reduced human and computational effort. Bayes' Theorem is reformulated in the language of statistical mechanics, wherein…

Methodology · Statistics 2026-04-28 Alfred C. K. Farris