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This research introduces a novel heuristic algorithm known as the Snake Locomotion Learning Search algorithm (SLLS) designed to address optimization problems. The SLLS draws inspiration from the locomotion patterns observed in snakes,…

Optimization and Control · Mathematics 2025-04-29 Sheng-Xue He

The energy landscapes of proteins have evolved to be different from most random heteropolymers. Many studies have concluded that evolutionary selection for rapid and reliable folding to a given structure that is stable at biological…

Disordered Systems and Neural Networks · Physics 2009-11-10 Steven S. Plotkin , Peter G. Wolynes

Evolutionary algorithms, inspired by natural evolution, aim to optimize difficult objective functions without computing derivatives. Here we detail the relationship between population genetics and evolutionary optimization and formulate a…

Populations and Evolution · Quantitative Biology 2023-07-19 Jakub Otwinowski , Colin LaMont

Phylogenetic trees are leaf-labelled trees used to model the evolution of species. In practice it is not uncommon to obtain two topologically distinct trees for the same set of species, and this motivates the use of distance measures to…

Data Structures and Algorithms · Computer Science 2026-03-24 David Mestel , Steven Chaplick , Steven Kelk , Ruben Meuwese

Macroevolution is considered as a problem of stochastic dynamics in a system with many competing agents. Evolutionary events (speciations and extinctions) are triggered by fitness records found by random exploration of the agents' fitness…

adap-org · Physics 2017-01-11 Paolo Sibani , Michael Brandt , Preben Alstroem

Gradual pattern extraction is a field in (KDD) Knowledge Discovery in Databases that maps correlations between attributes of a data set as gradual dependencies. A gradual dependency may take a form of "the more Attribute K , the less…

Databases · Computer Science 2022-09-01 Dickson Odhiambo Owuor , Thomas Runkler , Anne Laurent , Joseph Orero , Edmond Menya

The ability of a robot to plan complex behaviors with real-time computation, rather than adhering to predesigned or offline-learned routines, alleviates the need for specialized algorithms or training for each problem instance. Monte Carlo…

Robotics · Computer Science 2024-12-17 Benjamin Riviere , John Lathrop , Soon-Jo Chung

We address a primary question of computational as well as biological research on evolution: How can an exploration strategy adapt in such a way as to exploit the information gained about the problem at hand? We first introduce an integrated…

Biological Physics · Physics 2007-05-23 Marc Toussaint

How do the same mechanisms that faithfully regenerate complex developmental programs in spite of environmental and genetic perturbations also permit responsiveness to environmental signals, adaptation, and genetic evolution? Using the…

Quantitative Methods · Quantitative Biology 2023-10-20 David J. Jordan , Eric A. Miska

Ant raiding, the process of identifying and returning food to the nest or bivouac, is a fascinating example of collective motion in nature. During such raids ants lay pheromones to form trails for others to find a food source. In this work…

Adaptation and Self-Organizing Systems · Physics 2015-08-18 Shawn D. Ryan

We consider an asexual population evolving on rugged fitness landscapes which are defined on the multi-dimensional genotypic space and have many local optima. We track the most populated genotype as it changes when the population jumps from…

Populations and Evolution · Quantitative Biology 2009-11-13 Kavita Jain

Determining the optimal model for a given task often requires training multiple models from scratch, which becomes impractical as dataset and model sizes grow. A more efficient alternative is to expand smaller pre-trained models, but this…

Machine Learning · Computer Science 2025-06-17 Pranshu Malviya , Jerry Huang , Aristide Baratin , Quentin Fournier , Sarath Chandar

The genetic algorithm is an optimization procedure motivated by biological evolution and is successfully applied to optimization problems in different areas. A statistical mechanics model for its dynamics is proposed based on the…

Statistical Mechanics · Physics 2009-10-31 Stefan Bornholdt

The basic mechanics of evolution have been understood since Darwin. But debate continues over whether macroevolutionary phenomena are driven primary by the fitness structure of genotype space or by ecological interaction. In this paper we…

Populations and Evolution · Quantitative Biology 2012-10-22 David V. Foster , Mary M. Rorick , Tanja Gesell , Laura Feeney , Jacob G. Foster

Evolutionary algorithms solve problems by simulating the evolution of a population of candidate solutions. We focus on evolving permutations for ordering problems like the traveling salesperson problem (TSP), as well as assignment problems…

Neural and Evolutionary Computing · Computer Science 2022-06-02 Vincent A. Cicirello

How to simultaneously locate multiple global peaks and achieve certain accuracy on the found peaks are two key challenges in solving multimodal optimization problems (MMOPs). In this paper, a landscape-aware differential evolution (LADE)…

Neural and Evolutionary Computing · Computer Science 2025-02-26 Guo-Yun Lin , Zong-Gan Chen , Chuanbin Liu , Yuncheng Jiang , Sam Kwong , Jun Zhang , Zhi-Hui Zhan

In modular robotics, modules can be reconfigured to change the morphology of the robot, making it able to adapt for specific tasks. However, optimizing both the body and control is a difficult challenge due to the intricate relationship…

Robotics · Computer Science 2020-12-09 Jørgen Nordmoen , Frank Veenstra , Kai Olav Ellefsen , Kyrre Glette

Monte Carlo methods are widely used importance sampling techniques for studying complex physical systems. Integrating these methods with deep learning has significantly improved efficiency and accuracy in high-dimensional problems and…

Disordered Systems and Neural Networks · Physics 2024-12-24 Yixiong Ren , Jianhui Zhou

Sewall Wright's adaptive landscape metaphor penetrates a significant part of evolutionary thinking. Supplemented with Fisher's fundamental theorem of natural selection and Kimura's maximum principle, it provides a unifying and intuitive…

Populations and Evolution · Quantitative Biology 2017-05-05 Alexander S. Bratus , Artem S. Novozhilov , Yuri S. Semenov

Self-adaptive systems offer several attack surfaces due to the communication via different channels and the different sensors required to observe the environment. Often, attacks cause safety to be compromised as well, making it necessary to…

Cryptography and Security · Computer Science 2023-09-19 Thomas Witte , Raffaela Groner , Alexander Raschke , Matthias Tichy , Irdin Pekaric , Michael Felderer