Related papers: A statistical mechanical study of mechanical dual …
Protein folding is a universal process, very fast and accurate, which works consistently (as it should be) in a wide range of physiological conditions. The present work is based on three premises, namely: ($i$) folding reaction is a process…
Cells moving on a two dimensional substrate generate motion by polymerizing actin filament networks inside a flat membrane protrusion. New filaments are generated by branching off existing ones, giving rise to branched network structures.…
We consider the trapping reaction, $A+B\to B$, where $A$ and $B$ particles have a diffusive dynamics characterized by diffusion constants $D_A$ and $D_B$. The interaction with $B$ particles can be formally incorporated in an effective…
Here we study the shapes of droplets captured between chemically distinct parallel plates. This work is a preliminary step toward characterizing the influence of second-phase bridging between biomolecular surfaces on their solution…
By means of Molecular Dynamics simulations, we investigate the elementary process of avalanches and size segregation by surface flow in 2 dimensions: a single ball confined to moving along an inclined line consisting of balls. The global…
Curvature in biological membranes can be generated by a variety of different molecular mechanisms such as protein scaffolding, lipid or protein asymmetry, cytoskeletal forces, etc. These mechanisms have the net effect of generating stresses…
The elastic properties of semiflexible polymers are of great importance in biology. There are experiments on biopolymers like double stranded DNA, which twist and stretch single molecules to probe their elastic properties. It is known that…
In this Part 2 we study further experimental properties of two-layer exchange flows in a stratified inclined duct (SID), which are turbulent, strongly-stratified, shear-driven, and continuously-forced. We analyse the same state-of-the-art…
We investigate the effect of an applied electric potential on the mechanics of a coarse grained POPC bilayer under tension. The size and duration of our simulations allow for a detailed and accurate study of the fluctuations. Effects on the…
We consider two cantilevered beams undergoing frictional impacts at the free end. The beams are designed to be of similar geometry so that they have distinct but close natural frequencies. Under harmonic base excitation near the primary…
Motions of a material point along a set of parabolas are studied, taking into account the forces of Coulomb friction. The obtained results are compared with similar motions along the cycloid. The analysis is carried out using numerical…
Magnetic beads attract each other forming chains. We pushed such chains into an inclined Hele-Shaw cell and discovered that they spontaneously form self-similar patterns. Depending on the angle of inclination of the cell, two completely…
The analysis of the statistical and dynamical fluctuations in nucleus-nucleus collisions on an event-by-event basis strongly relies on a comparison with specially constructed artificial events where statistical fluctuations and kinematical…
The optimal fluctuation approach is applied to study the most distant (non-universal) tails of the free-energy distribution function P(F) for an elastic string (of a large but finite length L) interacting with a quenched random potential. A…
We study the statistical mechanics of double-stranded semi-flexible polymers using both analytical techniques and simulation. We find a transition at some finite temperature, from a type of short range order to a fundamentally different…
The static friction between crystalline surfaces separated by a molecularly thin layer of adsorbed molecules is calculated using molecular dynamics simulations. These molecules naturally lead to a finite static friction that is consistent…
Very thin elastic sheets, even at zero temperature, exhibit nonlinear elastic response by virtue of their dominant bending modes. Their behavior is even richer at finite temperature. Here we use molecular dynamics (MD) to study the…
Abstract Self-similar, fractal nature of turbulence is discussed in the context of two dimensional turbulence, by considering the fractal structure of the wave-number domain using spirals. In loose analogy with phyllotaxis in plants, each…
We introduce a model of friction between two contacting (stationary or co-sliding) rough surfaces, each comprising a random ensemble of polydisperse hemispherical bumps. In the simplest version of the model, the bumps experience on contact…
Magnetic reconnection is a fundamental plasma process that converts magnetic energy into bulk flow energy, thermal energy, and nonthermal particle acceleration. Despite its importance, the statistical properties of the turbulent…