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Ising models with pairwise interactions are the least structured, or maximum-entropy, probability distributions that exactly reproduce measured pairwise correlations between spins. Here we use this equivalence to construct Ising models that…

Neurons and Cognition · Quantitative Biology 2009-12-31 Gasper Tkacik , Elad Schneidman , Michael J. Berry , William Bialek

Ising models with pairwise interactions are the least structured, or maximum-entropy, probability distributions that exactly reproduce measured pairwise correlations between spins. Here we use this equivalence to construct Ising models that…

Neurons and Cognition · Quantitative Biology 2007-05-23 Gasper Tkacik , Elad Schneidman , Michael J Berry , William Bialek

I consider the problem of deriving couplings of a statistical model from measured correlations, a task which generalizes the well-known inverse Ising problem. After reminding that such problem can be mapped on the one of expressing the…

Statistical Mechanics · Physics 2013-10-09 Iacopo Mastromatteo

We build simple models for the distribution of voting patterns in a group, using the Supreme Court of the United States as an example. The least structured, or maximum entropy, model that is consistent with the observed pairwise…

Physics and Society · Physics 2017-09-30 Edward D. Lee , Chase P. Broedersz , William Bialek

Financial markets are a classical example of complex systems as they comprise many interacting stocks. As such, we can obtain a surprisingly good description of their structure by making the rough simplification of binary daily returns.…

Statistical Finance · Quantitative Finance 2014-01-28 Thomas Bury

Several recent experiments in biology study systems composed of several interacting elements, for example neuron networks. Normally, measurements describe only the collective behavior of the system, even if in most cases we would like to…

Disordered Systems and Neural Networks · Physics 2010-10-12 Vitor Sessak

To establish a unified framework for studying both discrete and continuous coupling distributions, we introduce the {\it binomial} spin glass, a class of models where the couplings are sums of $m$ identically distributed Bernoulli random…

Disordered Systems and Neural Networks · Physics 2018-08-29 Mohammad-Sadegh Vaezi , Gerardo Ortiz , Martin Weigel , Zohar Nussinov

Recent numerical simulations indicate that several different equilibrium glass transitions may be characterized by diverging correlation lengths, and that these divergences are described by a non-mean-field, Ising-like, critical exponent. I…

Statistical Mechanics · Physics 2012-09-26 J. S. Langer

Inverse problems in statistical physics are motivated by the challenges of `big data' in different fields, in particular high-throughput experiments in biology. In inverse problems, the usual procedure of statistical physics needs to be…

Disordered Systems and Neural Networks · Physics 2017-11-07 H. Chau Nguyen , Riccardo Zecchina , Johannes Berg

Hierarchical spin-glasses are Ising spin models defined by recursively coupling together two equally-sized sub-systems. In this work a new hierarchical spin system is introduced wherein the sub-systems are recursively coupled together…

Disordered Systems and Neural Networks · Physics 2023-04-05 Gavin S Hartnett

Randomly coupled Ising spins constitute the classical model of collective phenomena in disordered systems, with applications covering ferromagnetism, combinatorial optimization, protein folding, stock market dynamics, and social dynamics.…

Disordered Systems and Neural Networks · Physics 2016-08-24 David Dahmen , Hannah Bos , Moritz Helias

The inverse problem of statistical mechanics involves finding the minimal Hamiltonian that is consistent with some observed set of correlation functions. This problem has received renewed interest in the analysis of biological networks; in…

Neurons and Cognition · Quantitative Biology 2010-12-30 Feraz Azhar , William Bialek

During the past decades, the Ising distribution has attracted interest in many applied disciplines, as the maximum entropy distribution associated to any set of correlated binary (`spin') variables with observed means and covariances.…

Disordered Systems and Neural Networks · Physics 2019-05-13 Adrien Wohrer

We study an effective spin model derived perturbatively from random transverse-field Ising model on the pyrochlore lattice. The model consists of spin-configurations on the pyrochlore lattice, restricted to the spin-ice subspace, with spins…

Strongly Correlated Electrons · Physics 2020-05-27 Anirudha Menon , Tom Pardini , Rajiv R. P. Singh

We study Ising chains with arbitrary multispin finite-range couplings, providing an explicit solution of the associated inverse Ising problem, i.e. the problem of inferring the values of the coupling constants from the correlation…

Statistical Mechanics · Physics 2011-11-16 Giacomo Gori , Andrea Trombettoni

Several types of biological networks have recently been shown to be accurately described by a maximum entropy model with pairwise interactions, also known as the Ising model. Here we present an approach for finding the optimal mappings…

Biological Physics · Physics 2015-05-14 Jeffrey D. Fitzgerald , Tatyana O. Sharpee

Recent work has shown that probabilistic models based on pairwise interactions-in the simplest case, the Ising model-provide surprisingly accurate descriptions of experiments on real biological networks ranging from neurons to genes.…

Quantitative Methods · Quantitative Biology 2007-12-18 Tamara Broderick , Miroslav Dudik , Gasper Tkacik , Robert E. Schapire , William Bialek

The inverse Ising model is used in computational neuroscience to infer probability distributions of the synchronous activity of large neuronal populations. This method allows for finding the Boltzmann distribution with single neuron biases…

Neurons and Cognition · Quantitative Biology 2022-07-27 Geoffroy Delamare , Ulisse Ferrari

We consider the inverse Ising problem, i.e. the inference of network couplings from observed spin trajectories for a model with continuous time Glauber dynamics. By introducing two sets of auxiliary latent random variables we render the…

Machine Learning · Statistics 2017-12-22 Christian Donner , Manfred Opper

We present a procedure to solve the inverse Ising problem, that is to find the interactions between a set of binary variables from the measure of their equilibrium correlations. The method consists in constructing and selecting specific…

Disordered Systems and Neural Networks · Physics 2015-05-30 Simona Cocco , Rémi Monasson
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