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Related papers: Shape-dependent bounds on cell growth rates

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It is well established that the mechanical environment influences cell functions in health and disease. Here, we address how the mechanical environment influences tumor growth, in particular, the shape of solid tumors. In an in vitro tumor…

Tissues and Organs · Quantitative Biology 2015-06-19 Kristen L. Mills , Ralf Kemkemer , Shiva Rudraraju , Krishna Garikipati

Quantitative single cell measurements have shown that cell cycle duration (the time between cell divisions) for diverse cell types is a noisy variable. The underlying distribution is mean scalable with a universal shape for many cell types…

Cell Behavior · Quantitative Biology 2016-03-07 Nash Rochman , Fangwei Si , Sean X. Sun

We present a general approach to study a class of random growth models in $n$-dimensional Euclidean space. These models are designed to capture basic growth features which are expected to manifest at the mesoscopic level for several…

Probability · Mathematics 2020-08-20 Amir Dembo , Pablo Groisman , Ruojun Huang , Vladas Sidoravicius

Cell fate decisions emerge as a consequence of a complex set of gene regulatory networks. Models of these networks are known to have more parameters than data can determine. Recent work, inspired by Waddington's metaphor of a landscape, has…

Quantitative Methods · Quantitative Biology 2023-05-08 Archishman Raju , Eric D. Siggia

One of the major characteristics of living organisms is metabolic rate, which is the amount of energy produced per unit of time. When the mass of organisms increases, the metabolic rate also increases (usually as a power function of mass),…

Other Quantitative Biology · Quantitative Biology 2024-12-02 Yuri K. Shestopaloff

We investigate the growth of a crystal that is built by depositing cubes onto the inside of a corner. The interface of this crystal evolves into a limiting shape in the long-time limit. Building on known results for the corresponding…

Statistical Mechanics · Physics 2012-03-06 Jason Olejarz , P. L. Krapivsky , S. Redner , K. Mallick

We study self-replicating molecules under externally varying conditions. Changing conditions such as temperature variations and/or alterations in the environment's resource composition lead to both non-constant replication and decay rates…

Biological Physics · Physics 2016-09-08 Claus O. Wilke , Christopher Ronnewinkel , Thomas Martinetz

Image generation techniques, particularly latent diffusion models, have exploded in popularity in recent years. Many techniques have been developed to manipulate and clarify the semantic concepts these large-scale models learn, offering…

Computer Vision and Pattern Recognition · Computer Science 2024-06-07 E. Zhixuan Zeng , Yuhao Chen , Alexander Wong

Monod's law is a widely accepted phenomenology for bacterial growth. Since it has the same functional form as the Michaelis--Menten equation for enzyme kinetics, cell growth is often considered to be locally constrained by a single…

Cell Behavior · Quantitative Biology 2025-10-14 Jumpei F. Yamagishi , Tetsuhiro S. Hatakeyama

We study the growth of random networks under a constraint that the diameter, defined as the average shortest path length between all nodes, remains approximately constant. We show that if the graph maintains the form of its degree…

Statistical Mechanics · Physics 2007-05-23 Rajan M. Lukose , Lada A. Adamic

The dynamics of growth of bacterial populations has been extensively studied for planktonic cells in well-agitated liquid culture, in which all cells have equal access to nutrients. In the real world, bacteria are more likely to live in…

Populations and Evolution · Quantitative Biology 2017-11-01 Xinxian Shao , Andrew Mugler , Justin Kim , Ha Jun Jeong , Bruce Levin , Ilya Nemenman

Pattern formation often occurs in confined systems, yet how boundaries shape patterning dynamics is unclear. We develop techniques to analyze confinement effects in nonlocal advection-diffusion equations, which generically capture the…

Pattern Formation and Solitons · Physics 2025-09-11 Jan Rombouts , Michael L Zhao , Alexander Aulehla , Anna Erzberger

Our aim is to provide an overview of half-saturation constants reported in literature and to explore their consistency with body size. In many ecological models, intake of nutrients by plants and consumption of food by animals is considered…

Quantitative Methods · Quantitative Biology 2014-10-08 Christian Mulder , A. Jan Hendriks

Molluscan shells come in various shapes and sizes. Despite this diversity, each species produces a shell with a characteristic shape that is independent of environmental conditions. We seek to understand this robust complexity. We are…

Quantitative Methods · Quantitative Biology 2026-04-27 Huan Liu , Kaushik Bhattacharya

In order to grow in any given environment, bacteria need to collect information about the medium composition and implement suitable growth strategies by adjusting their regulatory and metabolic degrees of freedom. In the standard sense,…

Biological Physics · Physics 2023-03-22 Anna Paola Muntoni , Andrea De Martino

Recently, much attention has been given to a noteworthy property of some soft tissues: their ability to grow. Many attempts have been made to model this behaviour in biology, chemistry and physics. Using the theory of finite elasticity,…

Tissues and Organs · Quantitative Biology 2009-11-13 Julien Dervaux , Martine Ben Amar

Fundamental mechanisms governing cell size control and homeostasis are still poorly understood. The relationship between sizes at division and birth in single cells is used as a metric to categorize the basis of size homeostasis [1-3].…

Cell Behavior · Quantitative Biology 2020-01-08 Giuseppe Facchetti , Benjamin Knapp , Fred Chang , Martin Howard

We address a novel approach for stochastic individual-based modelling of a single species population. Individuals are distinguished by their remaining lifetimes, which are regulated by the interplay between the inexorable running of time…

Populations and Evolution · Quantitative Biology 2021-01-08 Luis R. T. Neves , Leonardo Paulo Maia

Studying shape changing thick surfaces induced by differential growth helps us understand morphogenesis in biology and offers opportunities for device design. While ideal 2D differential growth maps have been well studied for both isotropic…

Biological Physics · Physics 2026-02-25 Wan Yee Yau , Carl D. Modes

The mean size of exponentially dividing E. coli cells cultured in different nutrient conditions is known to depend on the mean growth rate only. However, the joint fluctuations relating cell size, doubling time and individual growth rate…

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