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The discovery of structure from time series data is a key problem in fields of study working with complex systems. Most identifiability results and learning algorithms assume the underlying dynamics to be discrete in time. Comparatively…

Machine Learning · Statistics 2022-02-04 Alexis Bellot , Kim Branson , Mihaela van der Schaar

GraphRT is a graph based deep learning model that predicts the retention time (RT) of peptides in liquid chromatography tandem mass spectrometry (LC MSMS) experiments. Each amino acid is represented as a graph, capturing its atomic and…

Biomolecules · Quantitative Biology 2024-02-06 Mark Drvodelic , Mingming Gong , Andrew I. Webb

An algorithm for generating the structure of a directed acyclic graph from data using the notion of causal input lists is presented. The algorithm manipulates the ordering of the variables with operations which very much resemble arc…

Artificial Intelligence · Computer Science 2013-03-25 Remco R. Bouckaert

The graph with complex annotations is the most potent data type, whose constantly evolving motivates further exploration of the unsupervised dynamic graph representation. One of the representative paradigms is graph contrastive learning. It…

Machine Learning · Computer Science 2024-12-20 Yiming Xu , Bin Shi , Teng Ma , Bo Dong , Haoyi Zhou , Qinghua Zheng

We are interested in the problem of learning the directed acyclic graph (DAG) when data are generated from a linear structural equation model (SEM) and the causal structure can be characterized by a polytree. Under the Gaussian polytree…

Machine Learning · Statistics 2024-05-15 Xingmei Lou , Yu Hu , Xiaodong Li

The scheduling and schedulability analysis of real-time directed acyclic graph (DAG) task systems have received much recent attention. The DAG model can accurately represent intra-task parallelim and precedence constraints existing in many…

Operating Systems · Computer Science 2018-08-02 Zheng Dong , Cong Liu

Parallel real-time systems (e.g., autonomous driving systems) often contain functionalities with complex dependencies and execution uncertainties, leading to significant timing variability which can be represented as a probabilistic…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-04-08 Yiyang Gao , Shuai Zhao , Boyang Li , Xinwei Fang , Zhiyang Lin , Zhe Jiang , Nan Guan

Motivation: Algorithms that discover variables which are causally related to a target may inform the design of experiments. With observational gene expression data, many methods discover causal variables by measuring each variable's degree…

Quantitative Methods · Quantitative Biology 2014-07-30 Eric V. Strobl , Shyam Visweswaran

Learning a Bayesian network (BN) from data can be useful for decision-making or discovering causal relationships. However, traditional methods often fail in modern applications, which exhibit a larger number of observed variables than data…

Computation · Statistics 2018-06-26 Raj Agrawal , Tamara Broderick , Caroline Uhler

In this work, we are interested in structure learning for a set of spatially distributed dynamical systems, where individual subsystems are coupled via latent variables and observed through a filter. We represent this model as a directed…

Artificial Intelligence · Computer Science 2016-11-03 Oliver M. Cliff , Mikhail Prokopenko , Robert Fitch

Simulations are ubiquitous in machine learning. Especially in graph learning, simulations of Directed Acyclic Graphs (DAG) are being deployed for evaluating new algorithms. In the literature, it was recently argued that…

Machine Learning · Computer Science 2022-06-16 Jonas Seng , Matej Zečević , Devendra Singh Dhami , Kristian Kersting

The investigation of directed acyclic graphs (DAGs) encoding the same Markov property, that is the same conditional independence relations of multivariate observational distributions, has a long tradition; many algorithms exist for model…

Methodology · Statistics 2012-09-27 Alain Hauser , Peter Bühlmann

Bayesian networks represent relations between variables using a directed acyclic graph (DAG). Learning the DAG is an NP-hard problem and exact learning algorithms are feasible only for small sets of variables. We propose two scalable…

Machine Learning · Computer Science 2021-07-02 Pierre Gillot , Pekka Parviainen

We study the problem of learning the topology of a directed Gaussian Graphical Model under the equal-variance assumption, where the graph has $n$ nodes and maximum in-degree $d$. Prior work has established that $O(d \log n)$ samples are…

Machine Learning · Computer Science 2025-11-11 Constantinos Daskalakis , Vardis Kandiros , Rui Yao

We describe a novel method for modeling non-stationary multivariate time series, with time-varying conditional dependencies represented through dynamic networks. Our proposed approach combines traditional multi-scale modeling and network…

Methodology · Statistics 2017-12-25 Xinyu Kang , Apratim Ganguly , Eric D. Kolaczyk

The combinatorial problem of learning directed acyclic graphs (DAGs) from data was recently framed as a purely continuous optimization problem by leveraging a differentiable acyclicity characterization of DAGs based on the trace of a matrix…

Machine Learning · Computer Science 2023-01-18 Kevin Bello , Bryon Aragam , Pradeep Ravikumar

LWF chain graphs combine directed acyclic graphs and undirected graphs. We present a PC-like algorithm that finds the structure of chain graphs under the faithfulness assumption to resolve the problem of scalability of the proposed…

Artificial Intelligence · Computer Science 2020-05-29 Mohammad Ali Javidian , Marco Valtorta , Pooyan Jamshidi

To date, most directed acyclic graphs (DAGs) structure learning approaches require data to be stored in a central server. However, due to the consideration of privacy protection, data owners gradually refuse to share their personalized raw…

Machine Learning · Computer Science 2023-01-18 Erdun Gao , Junjia Chen , Li Shen , Tongliang Liu , Mingming Gong , Howard Bondell

A well-studied challenge that arises in the structure learning problem of causal directed acyclic graphs (DAG) is that using observational data, one can only learn the graph up to a "Markov equivalence class" (MEC). The remaining undirected…

Machine Learning · Computer Science 2022-05-20 Vibhor Porwal , Piyush Srivastava , Gaurav Sinha

Directed acyclic graph (DAG) tasks are currently adopted in the real-time domain to model complex applications from the automotive, avionics, and industrial domains that implement their functionalities through chains of intercommunicating…

Machine Learning · Computer Science 2024-01-12 Binqi Sun , Mirco Theile , Ziyuan Qin , Daniele Bernardini , Debayan Roy , Andrea Bastoni , Marco Caccamo