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Let $G = (V,E)$ be a connected directed graph on $n$ vertices. Assign values from the set $\{1,2,\dots,n\}$ to the vertices of $G$ and update the values according to the following rule: uniformly at random choose a vertex and update its…

Data Structures and Algorithms · Computer Science 2024-06-05 John Larkin

Moran Birth-death process is a standard stochastic process that is used to model natural selection in spatially structured populations. A newly occurring mutation that invades a population of residents can either fixate on the whole…

Populations and Evolution · Quantitative Biology 2024-10-15 Lenka Kopfová , Josef Tkadlec

Evolutionary graph theory models the effects of natural selection and random drift on structured populations of competing mutant and non-mutant individuals. Recent studies have found that fixation times in such systems often have…

Populations and Evolution · Quantitative Biology 2019-07-31 David Hathcock , Steven H. Strogatz

In this paper we consider the problem of graph-based transductive classification, and we are particularly interested in the directed graph scenario which is a natural form for many real world applications. Different from existing research…

Computer Vision and Pattern Recognition · Computer Science 2014-03-19 Jaydeep De , Xiaowei Zhang , Li Cheng

We present a geometrically enhanced Markov chain Monte Carlo sampler for networks based on a discrete curvature measure defined on graphs. Specifically, we incorporate the concept of graph Forman curvature into sampling procedures on both…

Machine Learning · Statistics 2021-10-12 John Sigbeku , Emil Saucan , Anthea Monod

We investigate absorption, i.e., almost sure convergence to an absorbing state, in time-varying (non-homogeneous) discrete-time Markov chains with finite state space. We consider systems that can switch among a finite set of transition…

Systems and Control · Electrical Eng. & Systems 2020-08-18 Yasin Yazicioglu

We study a simple random process in which vertices of a connected graph reach consensus through pairwise interactions. We compute outcome probabilities, which do not depend on the graph structure, and consider the expected time until a…

Probability · Mathematics 2020-08-12 John Haslegrave , Mate Puljiz

The area of sublinear algorithms have recently received a lot of attention. In this setting, one has to choose specific access model for the input, as the algorithm does not have time to pre-process or even to see the whole input. A…

Data Structures and Algorithms · Computer Science 2020-09-24 Jakub Tětek

We study continuous time Markov processes on graphs. The notion of frequency is introduced, which serves well as a scaling factor between any Markov time of a continuous time Markov process and that of its jump chain. As an application, we…

Probability · Mathematics 2007-05-23 Jianjun Tian , Xiao-Song Lin

We define the Sampled Moran Genealogy Process, a continuous-time Markov process on the space of genealogies with the demography of the classical Moran process, sampled through time. To do so, we begin by defining the Moran Genealogy Process…

Populations and Evolution · Quantitative Biology 2020-10-21 Aaron A. King , Qianying Lin , Edward L. Ionides

Probabilistic zero forcing is a coloring game played on a graph where the goal is to color every vertex blue starting with an initial blue vertex set. As long as the graph is connected, if at least one vertex is blue then eventually all of…

Combinatorics · Mathematics 2022-01-13 Shyam Narayanan , Alec Sun

We give a generalization to a continuous setting of the classic Markov chain tree Theorem. In particular, we consider an irreducible diffusion process on a metric graph. The unique invariant measure has an atomic component on the vertices…

Probability · Mathematics 2020-02-04 Michele Aleandri , Matteo Colangeli , Davide Gabrielli

We present the first algorithm for generating random variates exactly uniformly from the set of perfect matchings of a bipartite graph with a polynomial expected running time over a nontrivial set of graphs. Previous Markov chain approaches…

Probability · Mathematics 2007-05-23 Mark Huber

A sink-free orientation of a finite undirected graph is a choice of orientation for each edge such that every vertex has out-degree at least 1. Bubley and Dyer (1997) use Markov Chain Monte Carlo to sample approximately from the uniform…

Probability · Mathematics 2009-09-25 Henry Cohn , Robin Pemantle , James Propp

This paper introduces the Attracting Random Walks model, which describes the dynamics of a system of particles on a graph with $n$ vertices. At each step, a single particle moves to an adjacent vertex (or stays at the current one) with…

Probability · Mathematics 2020-06-01 Julia Gaudio , Yury Polyanskiy

Probabilistic zero-forcing is a coloring process on a graph. In this process, an initial set of vertices is colored blue, and the remaining vertices are colored white. At each time step, blue vertices have a non-zero probability of forcing…

Combinatorics · Mathematics 2020-10-26 David Hu , Alec Sun

We introduce a statistical mechanics formalism for the study of constrained graph evolution as a Markovian stochastic process, in analogy with that available for spin systems, deriving its basic properties and highlighting the role of the…

Disordered Systems and Neural Networks · Physics 2015-05-13 A. C. C. Coolen , A. De Martino , A. Annibale

A simple random walk on a graph is a sequence of movements from one vertex to another where at each step an edge is chosen uniformly at random from the set of edges incident on the current vertex, and then transitioned to next vertex.…

Probability · Mathematics 2012-02-28 Mohammed Abdullah

Evolutionary graph theory studies the evolutionary dynamics of populations structured on graphs. A central problem is determining the probability that a small number of mutants overtake a population. Currently, Monte Carlo simulations are…

Computer Science and Game Theory · Computer Science 2013-01-14 Paulo Shakarian , Patrick Roos , Geoffrey Moores

The Moran process is a classic stochastic process that models the rise and takeover of novel traits in network-structured populations. In biological terms, a set of mutants, each with fitness $m\in(0,\infty)$ invade a population of…

Data Structures and Algorithms · Computer Science 2024-05-14 Petros Petsinis , Andreas Pavlogiannis , Josef Tkadlec , Panagiotis Karras