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In this paper, we study a two-lane totally asymmetric simple exclusion process (TASEP) coupled with random attachment and detachment of particles (Langmuir kinetics) in both lanes under open boundary conditions. Our model can describe the…

Quantitative Methods · Quantitative Biology 2009-11-13 Ruili Wang , Rui Jiang , Mingzhe Liu , Jiming Liu , Qing-song Wu

We study an open-chain totally asymmetric exclusion process (TASEP) with stochastic gates present at the two boundaries. The gating dynamics has been modeled keeping the physical system of ion-channel gating in mind. These gates can…

Statistical Mechanics · Physics 2014-10-16 Mithun Kumar Mitra , Sakuntala Chatterjee

The totally asymmetric simple exclusion principle (TASEP) is a fundamental model in nonequilibrium statistical mechanics. It describes the stochastic unidirectional movement of particles along a 1D chain of ordered sites. We consider the…

Optimization and Control · Mathematics 2025-01-29 Lars Grüne , Kilian Pioch , Thomas Kriecherbauer , Michael Margaliot

We study a minimal lattice model which describes bidirectional transport of "particles" driven along a one dimensional track, as is observed in microtubule based, motor protein driven bidirectional transport of cargo vesicles, lipid bodies…

Statistical Mechanics · Physics 2011-09-29 Sudipto Muhuri , Lenin Shagolsem , Madan Rao

Fundamental biological processes such as transcription and translation, where a genetic sequence is sequentially read by a macromolecule, have been well described by a classical model of non-equilibrium statistical physics, the totally…

Quantitative Methods · Quantitative Biology 2019-08-15 Jingkui Wang , Benjamin Pfeuty , Quentin Thommen , Carmen Romano , Marc Lefranc

We consider the dynamics of a single shock in a partially asymmetric simple exclusion process (PASEP) on a finite lattice with open boundaries in the sublattice-parallel updating scheme. We then construct the steady state of the system by…

Statistical Mechanics · Physics 2016-05-16 S. R. Masharian , F. Zamani

Research in combinatorics has often explored the asymmetric simple exclusion process (ASEP). The ASEP, inspired by examples from statistical mechanics, involves particles of various species moving around a lattice. With the traditional ASEP…

Combinatorics · Mathematics 2024-11-21 David W. Ash

Consider the Totally Asymmetric Simple Exclusion Process (TASEP) on the integer lattice $ \mathbb{Z} $. We study the functional Large Deviations of the integrated current $ \mathsf{h}(t,x) $ under the hyperbolic scaling of space and time by…

Probability · Mathematics 2019-02-14 Stefano Olla , Li-Cheng Tsai

We address how the interplay between the finite availability and carrying capacity of particles at different parts of a spatially extended system can control the steady state currents and density profiles in the one-dimensional…

Statistical Mechanics · Physics 2024-08-05 Astik Haldar , Parna Roy , Erwin Frey , Abhik Basu

We consider the totally asymmetric simple exclusion process (TASEP) with two-sided Bernoulli initial condition, i.e., with left density rho_- and right density rho_+. We consider the associated height function, whose discrete gradient is…

Mathematical Physics · Physics 2015-05-18 Ivan Corwin , Patrik L. Ferrari , Sandrine Péché

We propose a modification to the study of site-wise dynamically disordered totally asymmetric simple exclusion process (TASEP). Motivated by the process of gene transcription, a study in ref. \cite{waclaw2019totally} introduced an extension…

Statistical Mechanics · Physics 2024-05-13 Nikhil Bhatia , Arvind Kumar Gupta

We explore how the interplay of finite availability, carrying capacity of particles at different parts of a spatially extended system and particle diffusion between them control the steady state currents and density profiles in a…

Statistical Mechanics · Physics 2024-12-04 Sourav Pal , Parna Roy , Abhik Basu

Totally asymmetric exclusion processes (TASEP) with open boundaries are known to exhibit moving shocks or delocalised domain walls (DDW) for sufficiently small equal injection and extraction rates. In contrast TASEPs in an inhomogeneous…

Statistical Mechanics · Physics 2020-07-06 Parna Roy , Anjan Kumar Chandra , Abhik Basu

By generalizing the algebra of operators of the Asymmetric Simple Exclusion Process (ASEP), a multi-species ASEP in which particles can overtake each other,is defined on both open and closed one dimensional chains. On the ring the steady…

Condensed Matter · Physics 2009-10-31 V. karimipour

We introduce a model of a totally asymmetric simple exclusion process (TASEP) on a tree network where the aggregate hopping rate is constant from level to level. With this choice for hopping rates the model shows the same phase diagram as…

Statistical Mechanics · Physics 2013-11-12 Peter Mottishaw , Bartlomiej Waclaw , Martin R. Evans

We discuss the approximate phenomenological description of the motion of a single second-class particle in a two-species totally asymmetric simple exclusion process (TASEP) on a 1D lattice. Initially, the second class particle is located at…

Statistical Mechanics · Physics 2020-01-29 Aanjaneya Kumar , Deepak Dhar

We formulate and analyze the steady-state behavior of totally asymmetric simple exclusion processes (TASEPs) that contain periodically varying movement rates. In our models, particles at a majority sites hop to the right with rate $p_1$…

Statistical Mechanics · Physics 2007-05-23 Greg Lakatos , Tom Chou , Anatoly Kolomeisky

A one-way {\em street} of width M is modeled as a set of M parallel one-dimensional TASEPs. The intersection of two perpendicular streets is a square lattice of size M times M. We consider hard core particles entering each street with an…

Statistical Mechanics · Physics 2017-09-20 H. J. Hilhorst , C. Appert-Rolland

In this paper, the operation of totally asymmetric simple exclusion process with one or two shortcuts under open boundary conditions is discussed. Using both mathematical analysis and numerical simulations, we have found that, according to…

Mathematical Physics · Physics 2009-09-18 Rui Gu , Yunxin Zhang

We construct a one-dimensional totally asymmetric simple exclusion process (TASEP) on a ring with two segments having unequal hopping rates, coupled to particle non-conserving Langmuir kinetics (LK) characterized by equal attachment and…

Statistical Mechanics · Physics 2015-08-19 Tirthankar Banerjee , Anjan Kumar Chandra , Abhik Basu