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Software module clustering is an unsupervised learning method used to cluster software entities (e.g., classes, modules, or files) with similar features. The obtained clusters may be used to study, analyze, and understand the software…

Software Engineering · Computer Science 2020-12-03 Qusay I. Sarhan , Bestoun S. Ahmed , Miroslav Bures , Kamal Z. Zamli

Peer code review and continuous integration often interleave with each other in the modern software quality management. Although several studies investigate how non-technical factors (e.g., reviewer workload), developer participation and…

Software Engineering · Computer Science 2018-07-06 Mohammad Masudur Rahman , Chanchal K. Roy

Advances in natural language processing have resulted in large language models (LLMs) that are capable of generating understandable and sensible written text. Recent versions of these models, such as OpenAI Codex and GPT-3, can generate…

Software Engineering · Computer Science 2022-11-07 Stephen MacNeil , Andrew Tran , Arto Hellas , Joanne Kim , Sami Sarsa , Paul Denny , Seth Bernstein , Juho Leinonen

MLOps has emerged as a key solution to address many socio-technical challenges of bringing ML models to production, such as integrating ML models with non-ML software, continuous monitoring, maintenance, and retraining of deployed models.…

Software Engineering · Computer Science 2025-04-17 Beyza Eken , Samodha Pallewatta , Nguyen Khoi Tran , Ayse Tosun , Muhammad Ali Babar

Aim: In contrast to studies of defects found during code review, we aim to clarify whether code reviews measures can explain the prevalence of post-release defects. Method: We replicate a study by McIntoshet. al that uses additive…

Software Engineering · Computer Science 2020-08-28 Andrey Krutauz , Tapajit Dey , Peter C. Rigby , Audris Mockus

Open source software (OSS) has been playing a fundamental role in not only information technology but also our social lives. Attracted by various advantages of OSS, increasing commercial companies take extensive participation in open source…

Software Engineering · Computer Science 2024-05-28 Xuetao Li , Yuxia Zhang , Cailean Osborne , Minghui Zhou , Zhi Jin , Hui Liu

Computational methods have reshaped the landscape of modern biology. While the biomedical community is increasingly dependent on computational tools, the mechanisms ensuring open data, open software, and reproducibility are variably…

Other Quantitative Biology · Quantitative Biology 2020-07-28 Jaqueline J. Brito , Jun Li , Jason H. Moore , Casey S. Greene , Nicole A. Nogoy , Lana X. Garmire , Serghei Mangul

Computational research and data analytics increasingly relies on complex ecosystems of open source software (OSS) "libraries" -- curated collections of reusable code that programmers import to perform a specific task. Software documentation…

Computers and Society · Computer Science 2018-06-01 R. Stuart Geiger , Nelle Varoquaux , Charlotte Mazel-Cabasse , Chris Holdgraf

Platforms such as Stack Overflow are available for software practitioners to solicit solutions to their challenges and knowledge needs. The practices therein have in recent times however triggered quality related concerns. This is a…

Software Engineering · Computer Science 2020-10-26 Sarah Meldrum , Sherlock A. Licorish , Bastin Tony Roy Savarimuthu

Large Language Models (LLMs) often struggle with code generation tasks involving niche software libraries. Existing code generation techniques with only human-oriented documentation can fail -- even when the LLM has access to web search and…

Software Engineering · Computer Science 2025-05-09 Sandya Wijaya , Jacob Bolano , Alejandro Gomez Soteres , Shriyanshu Kode , Yue Huang , Anant Sahai

\underline{Context:} Logging is a fundamental yet complex practice in software engineering, essential for monitoring, debugging, and auditing software systems. With the increasing integration of machine learning (ML) components into…

Software Engineering · Computer Science 2026-01-12 Patrick Loic Foalem , Leuson Da Silva , Foutse Khomh , Ettore Merlo , Heng Li

Large Language Models (LLMs) increasingly automate software engineering tasks. While recent studies highlight the accelerated adoption of ``AI as a teammate'' in Open Source Software (OSS), developer interaction patterns remain…

Software Engineering · Computer Science 2026-01-21 Haoyu Gao , Peerachai Banyongrakkul , Hao Guan , Mansooreh Zahedi , Christoph Treude

Increasing code velocity is a common goal for a variety of software projects. The efficiency of the code review process significantly impacts how fast the code gets merged into the final product and reaches the customers. We conducted a…

Software Engineering · Computer Science 2023-11-07 Gunnar Kudrjavets , Ayushi Rastogi

Code review is a critical practice in modern software engineering, helping developers detect defects early, improve code quality, and facilitate knowledge sharing. With the rapid advancement of large language models (LLMs), a growing body…

Software Engineering · Computer Science 2026-02-17 Taufiqul Islam Khan , Shaowei Wang , Haoxiang Zhang , Tse-Hsun Chen

Any cutting-edge scientific research project requires a myriad of computational tools for data generation, management, analysis and visualization. Python is a flexible and extensible scientific programming platform that offered the perfect…

Quantitative Methods · Quantitative Biology 2008-03-14 Julius B. Lucks

Background: Despite a growing body of literature on the impact of software bots on open source software development teams, their effects on team communication, coordination, and collaboration practices are not well understood. Bots can have…

Software Engineering · Computer Science 2023-05-29 Leonore Röseler , Ingo Scholtes , Christoph Gote

Integrating third-party software components is a common practice in modern software development, offering significant advantages in terms of efficiency and innovation. However, this practice is fraught with risks related to software…

Software Engineering · Computer Science 2025-07-11 Boyuan Li , Chengwei Liu , Lingling Fan , Sen Chen , Zhenlin Zhang , Zheli Liu

Coding agents have received significant adoption in software development recently. Unlike traditional LLM-based code completion tools, coding agents work with autonomy (e.g., invoking external tools) and leave visible traces in software…

Software Engineering · Computer Science 2026-02-03 Andre Hora , Romain Robbes

Large language models (LLMs) have been touted to enable increased productivity in many areas of today's work life. Scientific research as an area of work is no exception: the potential of LLM-based tools to assist in the daily work of…

Software Engineering · Computer Science 2024-04-24 Mohamed Nejjar , Luca Zacharias , Fabian Stiehle , Ingo Weber

Progress is being made in code discoverability and preservation, but as discussed at ADASS XXI, many codes still remain hidden from public view. With the Astrophysics Source Code Library (ASCL) now indexed by the SAO/NASA Astrophysics Data…

Instrumentation and Methods for Astrophysics · Physics 2012-12-11 Alice Allen , Bruce Berriman , Robert Brunner , Dan Burger , Kimberly DuPrie , Robert J. Hanisch , Robert Mann , Jessica Mink , Christer Sandin , Keith Shortridge , Peter Teuben