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Deep neural network architectures often consist of repetitive structural elements. We introduce an approach that reveals these patterns and can be broadly applied to the study of deep learning. Similarly to how a power strip helps untangle…

Statistical Mechanics · Physics 2025-07-03 Donghee Lee , Hye-Sung Lee , Jaeok Yi

There is renewed interest in modeling and understanding the nervous system of the nematode $\textit{Caenorhabditis elegans}$ ($\textit{C. elegans}$), as this small model system provides a path to bridge the gap between nervous system…

Neurons and Cognition · Quantitative Biology 2025-05-20 Quilee Simeon , Anshul Kashyap , Konrad P Kording , Edward S Boyden

Networks describe a variety of interacting complex systems in social science, biology and information technology. Usually the nodes of real networks are identified not only by their connections but also by some other characteristics.…

Physics and Society · Physics 2015-05-13 Ginestra Bianconi , Paolo Pin , Matteo Marsili

Complex networks have emerged as a simple yet powerful framework to represent and analyze a wide range of complex systems. The problem of ranking the nodes and the edges in complex networks is critical for a broad range of real-world…

Physics and Society · Physics 2017-08-30 Hao Liao , Manuel Sebastian Mariani , Matus Medo , Yi-Cheng Zhang , Ming-Yang Zhou

A dynamic system, which is used in the neural network theory, Ising spin glasses and factor analysis, has been investigated. The properties of the connection matrix, which guarantee the coincidence of the set of the fixed points of the…

Disordered Systems and Neural Networks · Physics 2012-03-24 Leonid B. Litinskii

The study of neuronal morphology is important not only for its potential relationship with neuronal dynamics, but also as a means to classify diverse types of cells and compare than among species, organs, and conditions. In the present…

Neurons and Cognition · Quantitative Biology 2024-03-11 Alexandre Benatti , Henrique F. de Arruda , Luciano da F. Costa

A central problem of neuroscience involves uncovering the principles governing the organization of nervous systems which ensure robustness in brain development. The nematode Caenorhabditis elegans provides us with a model organism for…

Neurons and Cognition · Quantitative Biology 2020-07-01 Anand Pathak , Nivedita Chatterjee , Sitabhra Sinha

The understanding of neural activity patterns is fundamentally linked to an understanding of how the brain's network architecture shapes dynamical processes. Established approaches rely mostly on deviations of a given network from certain…

Neurons and Cognition · Quantitative Biology 2014-09-19 Marc-Thorsten Huett , Marcus Kaiser , Claus C. Hilgetag

Complex networks characterized by global transport processes rely on the presence of directed paths from input to output nodes and edges, which organize in characteristic linked components. The analysis of such network-spanning structures…

Disordered Systems and Neural Networks · Physics 2015-05-13 M. Angeles Serrano , Paolo De Los Rios

Numerous important problems can be framed as learning from graph data. We propose a framework for learning convolutional neural networks for arbitrary graphs. These graphs may be undirected, directed, and with both discrete and continuous…

Machine Learning · Computer Science 2016-06-09 Mathias Niepert , Mohamed Ahmed , Konstantin Kutzkov

Graph-structured data are pervasive across domains including social networks, biological networks, and knowledge graphs. Due to their non-Euclidean nature, such data pose significant challenges to conventional machine learning methods. This…

Machine Learning · Computer Science 2025-07-29 Yihan Wang , Jianing Zhao

Graph convolutional networks are a popular class of deep neural network algorithms which have shown success in a number of relational learning tasks. Despite their success, graph convolutional networks exhibit a number of peculiar features,…

Machine Learning · Computer Science 2022-08-22 Thomas Gebhart

We characterize the computational power of neural networks that follow the graph neural network (GNN) architecture, not restricted to aggregate-combine GNNs or other particular types. We establish an exact correspondence between the…

Machine Learning · Computer Science 2024-11-22 Timon Barlag , Vivian Holzapfel , Laura Strieker , Jonni Virtema , Heribert Vollmer

Social network analysis has long been an untiring topic of sociology. However, until the era of information technology, the availability of data, mainly collected by the traditional method of personal survey, was highly limited and…

Physics and Society · Physics 2010-07-23 Sang Hoon Lee , Pan-Jun Kim , Yong-Yeol Ahn , Hawoong Jeong

We demonstrate a spiking neural network for navigation motivated by the chemotaxis network of Caenorhabditis elegans. Our network uses information regarding temporal gradients in the tracking variable's concentration to make navigational…

Neural and Evolutionary Computing · Computer Science 2014-10-30 Shibani Santurkar , Bipin Rajendran

Connectomics and network neuroscience offer quantitative scientific frameworks for modeling and analyzing networks of structurally and functionally interacting neurons, neuronal populations, and macroscopic brain areas. This shift in…

Neurons and Cognition · Quantitative Biology 2020-10-06 Richard Betzel

In this article, we propose the approach to structural optimization of neural networks, based on the braid theory. The paper describes the basics of braid theory as applied to the description of graph structures of neural networks. It is…

Machine Learning · Computer Science 2022-07-12 Olga Lukyanova , Oleg Nikitin , Alex Kunin

Our theoretical understanding of deep learning has not kept pace with its empirical success. While network architecture is known to be critical, we do not yet understand its effect on learned representations and network behavior, or how…

Machine Learning · Computer Science 2022-07-22 Andrew M. Saxe , Shagun Sodhani , Sam Lewallen

In this paper, we introduce a novel method that combines multiple neural network results to decide the class of the input. This is the first study which used the method for web pages classification. In our model, each element is represented…

Computer Vision and Pattern Recognition · Computer Science 2020-12-29 Fahri Aydos , A. Murat Özbayoğlu , Yahya Şirin , M. Fatih Demirci

On the case that the number of dangling nodes is large, PageRank computation can be proceeded with a much smaller matrix through lumping all dangling nodes of a web graph into a single node. Thus, it saves many computational cost and…

Numerical Analysis · Mathematics 2021-11-02 Yongxin Dong , Yuehua Feng , Jianxin You , Jinrui Guan