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Despite the recent progress in genome sequencing and assembly, many of the currently available assembled genomes come in a draft form. Such draft genomes consist of a large number of genomic fragments (scaffolds), whose order and/or…

Genomics · Quantitative Biology 2022-05-27 Sergey Aganezov , Pavel Avdeyev , Nikita Alexeev , Yongwu Rong , Max A. Alekseyev

An algorithm is proposed that solves two decision problems for pseudo-Anosov elements in the mapping class group of a surface with at least one marked fixed point. The first problem is the root problem: decide if the element is a power and…

Dynamical Systems · Mathematics 2007-10-11 Jérôme Fehrenbach , Jérôme Los

We prove that with high probability, a uniform sample of $n$ points in a convex domain in $\mathbb{R}^d$ can be rounded to points on a grid of step size proportional to $1/n^{d+1+\epsilon}$ without changing the underlying chirotope…

Computational Geometry · Computer Science 2020-01-23 Jean Cardinal , Ruy Fabila-Monroy , Carlos Hidalgo-Toscano

The criteria for determining graph isomorphism are crucial for solving graph isomorphism problems. The necessary condition is that two isomorphic graphs possess invariants, but their function can only be used to filtrate and subdivide…

Graphics · Computer Science 2025-08-19 Chuanfu Hu , Aimin Hou

The \emph{generalized sorting problem} is a restricted version of standard comparison sorting where we wish to sort $n$ elements but only a subset of pairs are allowed to be compared. Formally, there is some known graph $G = (V, E)$ on the…

Data Structures and Algorithms · Computer Science 2021-11-16 William Kuszmaul , Shyam Narayanan

The groups whose orders factorise into at most four primes have been described (up to isomorphism) in various papers. Given such an order n, this paper exhibits a new explicit and compact determination of the isomorphism types of the groups…

Group Theory · Mathematics 2022-02-23 Heiko Dietrich , Bettina Eick , Xueyu Pan

We prove that isomorphism of tournaments of twin width at most $k$ can be decided in time $k^{O(\log k)}n^{O(1)}$. This implies that the isomorphism problem for classes of tournaments of bounded or moderately growing twin width is in…

Data Structures and Algorithms · Computer Science 2026-03-11 Martin Grohe , Daniel Neuen

We continue the study of selection and sorting of $n$ numbers under the adversarial comparator model, where comparisons can be adversarially tampered with if the arguments are sufficiently close. We derive a randomized sorting algorithm…

Data Structures and Algorithms · Computer Science 2025-09-09 Chris Trevisan

An explicit algorithm is presented for testing whether two non-directed graphs are isomorphic or not. It is shown that for a graph of n vertices, the number of n independent operations needed for the test is polynomial in n. A proof that…

Data Structures and Algorithms · Computer Science 2007-05-23 Moshe Schwartz

Let $K$ be a number field, let $A$ be a finite-dimensional $K$-algebra, let $\mathrm{J}(A)$ denote the Jacobson radical of $A$, and let $\Lambda$ be an $\mathcal{O}_{K}$-order in $A$. Suppose that each simple component of the semisimple…

Number Theory · Mathematics 2022-09-01 Werner Bley , Tommy Hofmann , Henri Johnston

To address the problem of 3D point matching where the poses of two point sets are unknown, we adapt a recently proposed path following based method to use similarity transformation instead of the original affine transformation. The reduced…

Computer Vision and Pattern Recognition · Computer Science 2017-01-05 Wei Lian

Algorithmic decidability is established for two order-theoretic properties of downward closed subsets defined by finitely many obstructions in two infinite posets. The properties under consideration are: (a) being atomic, i.e. not being…

Combinatorics · Mathematics 2020-12-23 Matthew McDevitt , Nik Ruskuc

In the present article, we show the existence of a coupled fixed point for an order preserving mapping in a preordered left K-complete quasi-pseudometric space using a preorder induced by an appropriate function. We also define the concept…

General Mathematics · Mathematics 2014-11-14 Yaé Ulrich Gaba

Graphs are widely used to model complicated data semantics in many application domains. In this paper, two novel and efficient algorithms Fast-ON and Fast-P are proposed for solving the subgraph isomorphism problem. The two algorithms are…

Data Structures and Algorithms · Computer Science 2019-04-19 Mosab Hassaan , Karam Gouda

This paper shows that pairwise PageRank orders emerge from two-hop walks. The main tool used here refers to a specially designed sign-mirror function and a parameter curve, whose low-order derivative information implies pairwise PageRank…

Machine Learning · Computer Science 2019-03-12 Ying Tang

Two continuous maps $f, g : \mathbb{C}^2\to\mathbb{C}^2$ are said to be topologically equivalent if there exist homeomorphisms $\varphi,\psi:\mathbb{C}^2\to\mathbb{C}^2$ satisfying $\psi\circ f\circ\varphi = g$. It is known that there are…

Algebraic Geometry · Mathematics 2024-02-15 Boulos El Hilany , Kemal Rose

We introduce a `concrete complexity' model for studying algorithms for matching in bipartite graphs. The model is based on the "demand query" model used for combinatorial auctions. Most (but not all) known algorithms for bipartite matching…

Computational Complexity · Computer Science 2019-06-12 Noam Nisan

The order topology $\tau_o(P)$ (resp. the sequential order topology $\tau_{os}(P)$) on a poset $P$ is the topology that has as its closed sets those that contain the order limits of all their order convergent nets (resp. sequences). For a…

Operator Algebras · Mathematics 2014-11-10 Emmanuel Chetcuti , Jan Hamhalter , Hans Weber

We study systems of orientations on triples that satisfy the following so-called interiority condition: $\circlearrowleft(ABD)=~\circlearrowleft(BCD)=~\circlearrowleft(CAD)=1$ implies $\circlearrowleft(ABC)=1$ for any $A,B,C,D$. We call…

Combinatorics · Mathematics 2025-09-17 Péter Ágoston , Gábor Damásdi , Balázs Keszegh , Dömötör Pálvölgyi

We investigate Newton's method for complex polynomials of arbitrary degree $d$, normalized so that all their roots are in the unit disk. For each degree $d$, we give an explicit set $\mathcal{S}_d$ of $3.33d\log^2 d(1 + o(1))$ points with…

Dynamical Systems · Mathematics 2016-03-18 Todor Bilarev , Magnus Aspenberg , Dierk Schleicher