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The efficient execution of image processing algorithms is an active area of Bioinformatics. In image processing, one of the classes of algorithms or computing pattern that works with irregular data structures is the Irregular Wavefront…

Distributed, Parallel, and Cluster Computing · Computer Science 2016-05-04 Jeremias Gomes , George Teodoro

Advancements in multi-core have created interest among many research groups in finding out ways to harness the true power of processor cores. Recent research suggests that on-board component such as cache memory plays a crucial role in…

Hardware Architecture · Computer Science 2011-11-15 N. Ramasubramanian , Srinivas V. V. , N. Ammasai Gounden

Processing-in-Memory (PIM) enhances memory with computational capabilities, potentially solving energy and latency issues associated with data transfer between memory and processors. However, managing concurrent computation and data flow…

Hardware Architecture · Computer Science 2025-05-09 Ahmed Mamdouh , Haoran Geng , Michael Niemier , Xiaobo Sharon Hu , Dayane Reis

Heterogeneous computing systems provide high performance and energy efficiency. However, to optimally utilize such systems, solutions that distribute the work across host CPUs and accelerating devices are needed. In this paper, we present a…

Software Engineering · Computer Science 2021-06-04 Suejb Memeti , Sabri Pllana

Edge computing has emerged as a pivotal technology, offering significant advantages such as low latency, enhanced data security, and reduced reliance on centralized cloud infrastructure. These benefits are crucial for applications requiring…

Distributed, Parallel, and Cluster Computing · Computer Science 2026-02-24 Tomasz Szydlo , Viacheslav Horbanov , Devki Nandan Jha , Shashikant Ilager , Aleksander Slominski , Rajiv Ranjan

Graph analytics techniques based on spectral methods process extremely large sparse matrices with millions or even billions of non-zero values. Behind these algorithms lies the Top-K sparse eigenproblem, the computation of the largest…

Hardware Architecture · Computer Science 2022-01-20 Francesco Sgherzi , Alberto Parravicini , Marco Domenico Santambrogio

This work describes the challenges presented by porting parts ofthe Gysela code to the Intel Xeon Phi coprocessor, as well as techniques used for optimization, vectorization and tuning that can be applied to other applications. We evaluate…

Computational Physics · Physics 2015-08-04 G. Latu , M. Haefele , J. Bigot , V. Grandgirard , T. Cartier-Michaud , F. Rozar

Message Passing Interface (MPI) is widely used to implement parallel programs. Although Windowsbased architectures provide the facilities of parallel execution and multi-threading, little attention has been focused on using MPI on these…

Distributed, Parallel, and Cluster Computing · Computer Science 2011-05-31 Alaa Ismail Elnashar

Not only with the large host memory for supporting large scale graph processing, GPU-accelerated heterogeneous architecture can also provide a great potential for high-performance computing. However, few existing heterogeneous systems can…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-06-05 Xianliang Li

Efficient implementations of the classical molecular dynamics (MD) method for Lennard-Jones particle systems are considered. Not only general algorithms but also techniques that are efficient for some specific CPU architectures are also…

Statistical Mechanics · Physics 2015-03-17 H. Watanabe , M. Suzuki , N. Ito

We present a case-study on the utility of graphics cards to perform massively parallel simulation of advanced Monte Carlo methods. Graphics cards, containing multiple Graphics Processing Units (GPUs), are self-contained parallel…

Computation · Statistics 2015-05-05 Anthony Lee , Christopher Yau , Michael B. Giles , Arnaud Doucet , Christopher C. Holmes

Parallel computing using accelerators has gained widespread research attention in the past few years. In particular, using GPUs for general purpose computing has brought forth several success stories with respect to time taken, cost, power,…

Maintaining computational load balance is important to the performant behavior of codes which operate under a distributed computing model. This is especially true for GPU architectures, which can suffer from memory oversubscription if…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-11-05 Michael E. Rowan , Axel Huebl , Kevin N. Gott , Jack Deslippe , Maxence Thévenet , Remi Lehe , Jean-Luc Vay

The optimization of submodular functions constitutes a viable way to perform clustering. Strong approximation guarantees and feasible optimization w.r.t. streaming data make this clustering approach favorable. Technically, submodular…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-01-22 Philipp-Jan Honysz , Sebastian Buschjäger , Katharina Morik

The popularity of Convolutional Neural Network (CNN) models and the ubiquity of CPUs imply that better performance of CNN model inference on CPUs can deliver significant gain to a large number of users. To improve the performance of CNN…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-07-09 Yizhi Liu , Yao Wang , Ruofei Yu , Mu Li , Vin Sharma , Yida Wang

This paper presents novel approaches to parallelizing particle interactions on a GPU when there are few particles per cell and the interactions are limited by a cutoff distance. The paper surveys classical algorithms and then introduces two…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-06-25 David Algis , Berenger Bramas , Emmanuelle Darles , Lilian Aveneau

Existing approaches to train neural networks that use large images require to either crop or down-sample data during pre-processing, use small batch sizes, or split the model across devices mainly due to the prohibitively limited memory…

Image and Video Processing · Electrical Eng. & Systems 2020-03-12 Kushal Datta , Imtiaz Hossain , Sun Choi , Vikram Saletore , Kyle Ambert , William J. Godinez , Xian Zhang

Gaussian Processes have become an indispensable part of the spatial statistician's toolbox but are unsuitable for analyzing large dataset because of the significant time and memory needed to fit the associated model exactly. Vecchia…

Computation · Statistics 2025-07-18 Zachary James , Joseph Guinness

Many artificial intelligence (AI) devices have been developed to accelerate the training and inference of neural networks models. The most common ones are the Graphics Processing Unit (GPU) and Tensor Processing Unit (TPU). They are highly…

Machine Learning · Computer Science 2022-10-25 xiangyang Ju , Yunsong Wang , Daniel Murnane , Nicholas Choma , Steven Farrell , Paolo Calafiura

We present a computational framework for piecewise constant functions (PCFs) and use this for several types of computations that are useful in statistics, e.g., averages, similarity matrices, and so on. We give a linear-time,…

Computation · Statistics 2024-04-11 Björn H. Wehlin