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Co-expression network is a critical technique for the identification of inter-gene interactions, which usually relies on all-pairs correlation (or similar measure) computation between gene expression profiles across multiple samples.…

Distributed, Parallel, and Cluster Computing · Computer Science 2016-09-28 Yongchao Liu , Tony Pan , Srinivas Aluru

With the ease-of-programming, flexibility and yet efficiency, MapReduce has become one of the most popular frameworks for building big-data applications. MapReduce was originally designed for distributed-computing, and has been extended to…

Distributed, Parallel, and Cluster Computing · Computer Science 2013-09-03 Mian Lu , Lei Zhang , Huynh Phung Huynh , Zhongliang Ong , Yun Liang , Bingsheng He , Rick Siow Mong Goh , Richard Huynh

Large-scale GPU traces play a critical role in identifying performance bottlenecks within heterogeneous High-Performance Computing (HPC) architectures. However, the sheer volume and complexity of a single trace of data make performance…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-10-22 Ankur Lahiry , Ayush Pokharel , Banooqa Banday , Seth Ockerman , Amal Gueroudji , Mohammad Zaeed , Tanzima Z. Islam , Line Pouchard

As large-scale HPC compute clusters increasingly adopt accelerators such as GPUs to meet the voracious demands of modern workloads, these clusters are increasingly becoming power constrained. Unfortunately, modern applications can often…

Distributed, Parallel, and Cluster Computing · Computer Science 2026-04-10 Rutwik Jain , Yiwei Jiang , Matthew D. Sinclair , Shivaram Venkataraman

The continued growth of the computational capability of throughput processors has made throughput processors the platform of choice for a wide variety of high performance computing applications. Graphics Processing Units (GPUs) are a prime…

Hardware Architecture · Computer Science 2018-05-01 Rachata Ausavarungnirun

Graph algorithms and techniques are increasingly being used in scientific and commercial applications to express relations and explore large data sets. Although conventional or commodity computer architectures, like CPU or GPU, can compute…

Hardware Architecture · Computer Science 2017-07-03 Michel A. Kinsy , Rashmi S. Agrawal , Hien D. Nguyen

The trend towards highly parallel multi-processing is ubiquitous in all modern computer architectures, ranging from handheld devices to large-scale HPC systems; yet many applications are struggling to fully utilise the multiple levels of…

Distributed, Parallel, and Cluster Computing · Computer Science 2013-07-19 Michael Lange , Gerard Gorman , Michele Weiland , Lawrence Mitchell , Xiaohu Guo , James Southern

Recently Graphics Processing Units (GPUs) have been used to speed up very CPU-intensive gravitational microlensing simulations. In this work, we use the Xeon Phi coprocessor to accelerate such simulations and compare its performance on a…

Instrumentation and Methods for Astrophysics · Physics 2017-03-30 Bin Chen , Ronald Kantowski , Xinyu Dai , Eddie Baron , Paul Van der Mark

Processing large-scale graph datasets is computationally intensive and time-consuming. Processor-centric CPU and GPU architectures, commonly used for graph applications, often face bottlenecks caused by extensive data movement between the…

Distributed, Parallel, and Cluster Computing · Computer Science 2026-02-11 Marzieh Barkhordar , Alireza Tabatabaeian , Mohammad Sadrosadati , Christina Giannoula , Juan Gomez Luna , Izzat El Hajj , Onur Mutlu , Alaa R. Alameldeen

Modeling data sharing in GPU programs is a challenging task because of the massive parallelism and complex data sharing patterns provided by GPU architectures. Better GPU caching efficiency can be achieved through careful task scheduling…

Distributed, Parallel, and Cluster Computing · Computer Science 2016-10-04 Lingda Li , Ari B. Hayes , Stephen A. Hackler , Eddy Z. Zhang , Mario Szegedy , Shuaiwen Leon Song

We present a new adaptive parallel algorithm for the challenging problem of multi-dimensional numerical integration on massively parallel architectures. Adaptive algorithms have demonstrated the best performance, but efficient many-core…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-06-24 Ioannis Sakiotis , Kamesh Arumugam , Marc Paterno , Desh Ranjan , Balša Terzić , Mohammad Zubair

In this paper, we explore the limits of graphics processors (GPUs) for general purpose parallel computing by studying problems that require highly irregular data access patterns: parallel graph algorithms for list ranking and connected…

Distributed, Parallel, and Cluster Computing · Computer Science 2010-02-25 Frank Dehne , Kumanan Yogaratnam

Graphics Processing Units (GPUs) were once used solely for graphical computation tasks but with the increase in the use of machine learning applications, the use of GPUs to perform general-purpose computing has increased in the last few…

Hardware Architecture · Computer Science 2021-02-16 Asim Ikram , Muhammad Awais Ali , Mirza Omer Beg

Interest in parallel architectures applied to real time selections is growing in High Energy Physics (HEP) experiments. In this paper we describe performance measurements of Graphic Processing Units (GPUs) and Intel Many Integrated Core…

Instrumentation and Detectors · Physics 2014-11-26 S. Amerio , D. Bastieri , M. Corvo , A. Gianelle , W. Ketchum , T. Liu , A. Lonardo , D. Lucchesi , S. Poprocki , R. Rivera , L. Tosoratto , P. Vicini , P. Wittich

Much of the current focus in high performance computing (HPC) for computational fluid dynamics (CFD) deals with grid based methods. However, parallel implementations for new meshfree particle methods such as Smoothed Particle Hydrodynamics…

Performance · Computer Science 2011-11-21 Jose M. Domínguez , Alejandro J. C. Crespo , Moncho Gómez-Gesteira

To assess how future progress in gravitational microlensing computation at high optical depth will rely on both hardware and software solutions, we compare a direct inverse ray-shooting code implemented on a graphics processing unit (GPU)…

Instrumentation and Methods for Astrophysics · Physics 2015-05-19 N. F. Bate , C. J. Fluke , B. R. Barsdell , H. Garsden , G. F. Lewis

Deploying deep learning models in cloud clusters provides efficient and prompt inference services to accommodate the widespread application of deep learning. These clusters are usually equipped with host CPUs and accelerators with distinct…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-07-24 Zinuo Cai , Hao Wang , Tao Song , Yang Hua , Ruhui Ma , Haibing Guan

Maximizing the performance potential of the modern day GPU architecture requires judicious utilization of available parallel resources. Although dramatic reductions can often be obtained through straightforward mappings, further performance…

Distributed, Parallel, and Cluster Computing · Computer Science 2014-08-19 Loren Schwiebert , Eyad Hailat , Kamel Rushaidat , Jason Mick , Jeffrey Potoff

In order to improve system performance efficiently, a number of systems choose to equip multi-core and many-core processors (such as GPUs). Due to their discrete memory these heterogeneous architectures comprise a distributed system within…

Distributed, Parallel, and Cluster Computing · Computer Science 2015-02-27 Hao Wu , Daniel Lohmann , Wolfgang Schröder-Preikschat

The recently proposed open-source KAZE image feature detection and description algorithm offers unprecedented performance in comparison to conventional ones like SIFT and SURF as it relies on nonlinear scale spaces instead of Gaussian…

Computer Vision and Pattern Recognition · Computer Science 2017-06-22 Ramkumar B , R. S. Hegde , Rob Laber , Hristo Bojinov