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200 papers

Linked-Reads technologies, such as 10x Genomics, combine both the high-quality and low cost of short-reads sequencing and a long-range information, through the use of barcodes able to tag reads which originate from a common long DNA…

Genomics · Quantitative Biology 2021-03-30 Pierre Morisse , Claire Lemaitre , Fabrice Legeai

With the ever-growing number of computing architectures, performance portability is an important aspect of (Lattice QCD) software. The Grid library provides a good framework for writing such code, as it thoroughly separates…

High Energy Physics - Lattice · Physics 2019-04-19 Daniel Richtmann , Peter A. Boyle , Tilo Wettig

One of the key requirements for the Lattice QCD Application Development as part of the US Exascale Computing Project is performance portability across multiple architectures. Using the Grid C++ expression template as a starting point, we…

High Energy Physics - Lattice · Physics 2018-04-18 Peter A. Boyle , M. A. Clark , Carleton DeTar , Meifeng Lin , Verinder Rana , Alejandro Vaquero Avilés-Casco

C++ code snippets from a multi-core parallel memory-efficient crossover for genetic programming are given. They may be adapted for separate generation evolutionary algorithms where large chromosomes or small RAM require no more than M + (2…

Neural and Evolutionary Computing · Computer Science 2026-05-07 W. B. Langdon

We present LLMQ, an end-to-end CUDA/C++ implementation for medium-sized language-model training, e.g. 3B to 32B parameters, on affordable, commodity GPUs. These devices are characterized by low memory availability and slow communication…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-12-18 Erik Schultheis , Dan Alistarh

I review the most recent evolutions of the QCD codes on new architectures, with a focus on the performances obtained by the different coding strategies as presented during the Lattice2017 conference.

High Energy Physics - Lattice · Physics 2018-04-18 Antonio Rago

In Lattice QCD, a major challenge in simulating physical quarks is the computational complexity of these simulations. In this proceeding, we describe the optimisation of Clover fermion action for Blue gene-Q architecture and how different…

High Energy Physics - Lattice · Physics 2014-09-01 Karthee Sivalingam , Peter Boyle

We present qcor - a language extension to C++ and compiler implementation that enables heterogeneous quantum-classical programming, compilation, and execution in a single-source context. Our work provides a first-of-its-kind C++ compiler…

We propose an IR for quantum computing that directly exposes quantum and classical data dependencies for the purpose of optimization. The Quantum Intermediate Representation for Optimization (QIRO) consists of two dialects, one input…

Quantum Physics · Physics 2022-04-14 David Ittah , Thomas Häner , Vadym Kliuchnikov , Torsten Hoefler

We investigate implementation of lattice Quantum Chromodynamics (QCD) code on the Intel Xeon Phi Knights Landing (KNL). The most time consuming part of the numerical simulations of lattice QCD is a solver of linear equation for a large…

High Energy Physics - Lattice · Physics 2017-12-06 Issaku Kanamori , Hideo Matsufuru

In recent years, several industrial solutions for the problem of multi-token code completion appeared, each making a great advance in the area but mostly focusing on cloud-based runtime and avoiding working on the end user's device. In this…

The LCG GRID system is the indispensable infrastructure for large scale computing required for ILC experiments. It had been used extensively for ILD LOI studies and its use will be further increased in coming DBD studies. Experiences during…

Instrumentation and Detectors · Physics 2010-06-22 Akiya Miyamoto , Go Iwai , Katsumasa Ikematsu

Code understanding and generation have fast become some of the most popular applications of language models (LMs). Nonetheless, research on multilingual aspects of Code-LMs (i.e., LMs for code generation) such as cross-lingual transfer…

Artificial Intelligence · Computer Science 2024-04-16 Indraneil Paul , Goran Glavaš , Iryna Gurevych

Extreme heterogeneity in emerging HPC systems are starting to include quantum accelerators, motivating runtimes that can coordinate between classical and quantum workloads. We present a proof-of-concept hybrid execution framework…

Integrating workloads with differing criticality levels presents a formidable challenge in achieving the stringent spatial and temporal isolation requirements imposed by safety-critical standards such as ISO26262. The shift towards…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-08-03 Diogo Costa , Luca Cuomo , Daniel Oliveira , Ida Maria Savino , Bruno Morelli , José Martins , Alessandro Biasci , Sandro Pinto

The paper describes an approach to implementing genetic programming, which uses the LLVM library to just-in-time compile/interpret the evolved abstract syntax trees. The solution is described in some detail, including a parser (based on…

Neural and Evolutionary Computing · Computer Science 2017-01-23 Michal Gregor , Juraj Spalek

Extensions to the C++ implementation of the QCD Data Parallel Interface are provided enabling acceleration of expression evaluation on NVIDIA GPUs. Single expressions are off-loaded to the device memory and execution domain leveraging the…

High Energy Physics - Lattice · Physics 2011-11-24 Frank Winter

We study incremental redundancy hybrid ARQ (IR-HARQ) schemes based on punctured, finite-length, LDPC codes. The transmission is assumed to take place over time varying binary erasure channels, such as mobile wireless channels at the…

Information Theory · Computer Science 2012-05-30 Iryna Andriyanova , Emina Soljanin

We present here our ongoing work on a Domain Specific Language which aims to simplify Monte-Carlo simulations and measurements in the domain of Lattice Quantum Chromodynamics. The tool-chain, called Qiral, is used to produce…

To address the urgent need in the NISQ era for high-performance, scalable quantum compilers and to advance the integration of classical and quantum computing, we present QLLVM, an advanced Quantum-Classical co-compilation framework built on…

Quantum Physics · Physics 2026-04-17 Yu Zhu , Qiming Du , Yuqiong Jin , Woji He , Hang Lian , Xin Zhou , Jinchen Xu , Zheng Shan