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Optical resonators have shown outstanding abilities to tailor chemical landscapes through enhanced light-matter interaction between confined optical modes and molecule vibrations. We propose a theoretical model to study cooperative…

Optics · Physics 2024-12-11 Mingxuan Xiao , Wei Wang , Wenjing Liu , Zheng Li , Shui-Jing Tang , Yun-Feng Xiao

We study the influence of the linear and nonlinear coupling processes on the correlation properties of a system composed of two bosonic modes. The coupling processes are treated as Gaussian while the modes are assumed to experience damping…

Quantum Physics · Physics 2025-06-23 Jakub Bembenek , Zbigniew Ficek

We discuss a schematic model of mode-coupling theory for force-driven active nonlinear microrheology, where a single probe particle is pulled by a constant external force through a dense host medium. The model exhibits both a glass…

Soft Condensed Matter · Physics 2018-07-11 Manuel Victor Gnann , Thomas Voigtmann

A molecular understanding of how protein function is related to protein structure will require an ability to understand large conformational changes between multiple states. Unfortunately these states are often separated by high free energy…

Biological Physics · Physics 2011-08-08 Juan R. Perilla , Thomas B. Woolf

Coupled systems in mesoscopic regime are of interest as charge fluctuation between the sub-systems will depend on electron-electron interactions and will play a dominant role in determining their thermodynamic properties. We study some…

Mesoscale and Nanoscale Physics · Physics 2009-09-29 P. Singha Deo , P. Koskinen , M. Manninen

A theoretical and experimental investigation is presented on the intermodal coupling between the flexural vibration modes of a single clamped-clamped beam. Nonlinear coupling allows an arbitrary flexural mode to be used as a self-detector…

Mesoscale and Nanoscale Physics · Physics 2010-09-14 H. J. R. Westra , M. Poot , H. S. J. van der Zant , W. J. Venstra

Based on a detailed crossbridge model for individual myosin II motors, we systematically study the influence of mechanical load and adenosine triphosphate (ATP) concentration on small myosin II ensembles made from different isoforms. For…

Subcellular Processes · Quantitative Biology 2016-11-10 Thorsten Erdmann , Kathrin Bartelheimer , Ulrich S. Schwarz

The influence of fast vibrations on energy transfer and conversion in natural molecular aggregates is an issue of central interest. This article shows the important role of high-energy quantized vibrations and their non-equilibrium dynamics…

Biological Physics · Physics 2013-01-30 Avinash Kolli , Edward J. O'Reilly , Gregory D. Scholes , Alexandra Olaya-Castro

The role of momentum correlations in fragmentation is studied within the framework of quantum molecular dynamics model. Our study is carried out by imposing momentum cut in the clusterization algorithm. The study reveals a strong effect of…

Nuclear Theory · Physics 2011-05-31 Sakshi Gautam , Rajni Kant

We study the dynamical behavior of a lattice model of glass former on a random graph, where no corrections to the mean field description are expected. We find that the behavior of dynamical correlation functions and dynamical susceptibility…

Disordered Systems and Neural Networks · Physics 2011-06-17 A. de Candia , M. Mauro , A. Coniglio

A simple and general formalism for mode coupling by a spatial, temporal or spatiotemporal perturbation in dispersive materials is developed. This formalism can be used for studying various linear and non-linear optical interactions…

Optics · Physics 2015-06-19 Brenda Dana , Lilya Lobachinsky , Alon Bahabad

In GO/MoSe2 semiconductor heterostructure, we have demonstrated a subtle control on the doping dynamics by modulating interlayer coupling through the combination of strain-reducing relative rotation of the constituting layers and variation…

What are the molecular mechanisms that dictate protein-protein binding stability and whether those are related to the ones behind protein fold stability are still largely open questions. Indeed, despite many past efforts, we still lack…

Biological Physics · Physics 2023-11-28 Fausta Desantis , Mattia Miotto , Lorenzo Di Rienzo , Edoardo Milanetti , Giancarlo Ruocco

Mixed order transitions are those which show a discontinuity of the order parameter as well as a divergent correlation length. We show that the behaviour of the order parameter correlation function along the transition line of mixed order…

Statistical Mechanics · Physics 2019-09-04 Mustansir Barma , Satya N. Majumdar , David Mukamel

Myosin-V is a highly processive dimeric protein that walks with 36nm steps along actin tracks, powered by coordinated ATP hydrolysis reactions in the two myosin heads. No previous theoretical models of the myosin-V walk reproduce all the…

Biomolecules · Quantitative Biology 2015-06-22 Neville J. Boon , Rebecca B. Hoyle

The experimental search for the QCD critical point by means of relativistic heavy-ion collisions necessitates the development of dynamical models of fluctuations. In this work we study the fluctuations of the net-baryon density near the…

Nuclear Theory · Physics 2020-11-25 Marlene Nahrgang , Marcus Bluhm

Minimal models of self-propelled particles with short-range volume exclusion interactions have been shown to exhibit signatures of phase separation. Here I show that the observed interfacial stability and fluctuations in motility-induced…

Soft Condensed Matter · Physics 2017-01-11 Chiu Fan Lee

We consider the lateral diffusion of a protein interacting with the curvature of the membrane. The interaction energy is minimized if the particle is at a membrane position with a certain curvature that agrees with the spontaneous curvature…

Soft Condensed Matter · Physics 2008-12-10 Stefan M. Leitenberger , Ellen Reister-Gottfried , Udo Seifert

The cooperative binding of molecular agents onto a substrate is pervasive in living systems. To study whether a system shows cooperativity, one can rely on a fluctuation analysis of quantities such as the number of substrate-bound units and…

We report first principles analysis of electron-phonon coupling in molecular devices under external bias voltage and during current flow. Our theory and computational framework are based carrying out density functional theory within the…

Materials Science · Physics 2009-11-11 N. Sergueev , D. Roubtsov , Hong Guo
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