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Experimental studies of the diffusion of biomolecules in the environment of biological cells are routinely confronted with multiple sources of stochasticity, whose identification renders the detailed data analysis of single molecule…

Statistical Mechanics · Physics 2015-06-15 Jae-Hyung Jeon , Eli Barkai , R. Metzler

Generative models have shown great promise in generating 3D geometric systems, which is a fundamental problem in many natural science domains such as molecule and protein design. However, existing approaches only operate on static…

Computer Vision and Pattern Recognition · Computer Science 2024-10-18 Jiaqi Han , Minkai Xu , Aaron Lou , Haotian Ye , Stefano Ermon

We study the dynamics of a tracer particle (TP) on a comb lattice populated by randomly moving hard-core particles in the dense limit. We first consider the case where the TP is constrained to move on the backbone of the comb only, and, in…

Statistical Mechanics · Physics 2015-12-02 O. Bénichou , P. Illien , G. Oshanin , A. Sarracino , R. Voituriez

We study the dynamics of a tagged particle in a glassy system under shear. The recently developed integration through transients approach based on mode coupling theory, is continued to arrive at the equations for the tagged particle…

Soft Condensed Matter · Physics 2011-07-07 Matthias Krüger , Fabian Weysser , Matthias Fuchs

It is well known that the similar universal behavior of infinite-size (bulk) systems of different nature requires the same basic conditions: space dimensionality; number components of order parameter; the type (short- or long-range) of the…

We develop a theory of amorphous interfaces in glass-forming liquids. We show that the statistical properties of these surfaces, which separate regions characterized by different amorphous arrangements of particles, coincide with the ones…

Disordered Systems and Neural Networks · Physics 2017-02-08 Giulio Biroli , Chiara Cammarota

Diffusion is a fundamental phenomenon that occurs ubiquitously in nature and remains the subject of continuous research interest. Understanding diffusion is a key to understanding leaving systems. In this Chapter, I discuss diffusion of…

Soft Condensed Matter · Physics 2018-10-15 Svyatoslav Kondrat

Ultracold quantum gases are highly controllable and, thus, capable of simulating difficult quantum many-body problems ranging from condensed matter physics to astrophysics. Although experimental realizations have so far been restricted to…

Quantum Gases · Physics 2022-02-17 Andrea Tononi , Axel Pelster , Luca Salasnich

Understanding particle motion in narrow channels is essential to guide progress in numerous applications, from filtration to vascular transport. Thermal or active fluctuations of channel walls for fluid-filled channels can slow down or…

Soft Condensed Matter · Physics 2023-12-29 Yating Wang , David S. Dean , Sophie Marbach , Ruben Zakine

The tube model is a central concept in polymer physics, and allows to reduce the complex many-filament problem of an entangled polymer solution to a single filament description. We investigate the probability distribution function of…

Soft Condensed Matter · Physics 2009-08-12 Hauke Hinsch , Erwin Frey

Investigating the behavior of noninteracting fermions subjected to local dephasing, we reveal that quasi-particle dephasing can induce superdiffusive transport. This superdiffusion arises from nodal points within the momentum distribution…

Statistical Mechanics · Physics 2023-12-18 Yu-Peng Wang , Chen Fang , Jie Ren

Water molecules confined between biological membranes exhibit a distinctive non-Gaussian displacement distribution, far different from bulk water. Here, we introduce a new transport equation for water molecules in the intermembrane space,…

Soft Condensed Matter · Physics 2024-04-19 Minho Lee , Euihyun Lee , Ji-Hyun Kim , Hyonseok Hwang , Minhaeng Cho , Jaeyoung Sung

Diffusion at solid-liquid interfaces is crucial in many technological and biophysical processes. Although its behavior seems deceivingly simple, recent studies showing passive superdiffusive transport suggest diffusion on surfaces may hide…

Statistical Mechanics · Physics 2016-05-25 Diego Krapf , Grace Campagnola , Kanti Nepal , Olve B. Peersen

Dilute granular flows are routinely described by collisional kinetic theory, but dense flows require a fundamentally different approach, due to long-lasting, many-body contacts. In the case of silo drainage, many continuum models have been…

Statistical Mechanics · Physics 2007-05-23 Martin Z. Bazant

We present a general mechanism to establish the existence of diffusing orbits in a large class of nearly integrable Hamiltonian systems. Our approach relies on successive applications of the `outer dynamics' along homoclinic orbits to a…

Dynamical Systems · Mathematics 2017-04-26 Marian Gidea , Rafael de la Llave , Tere Seara

The observed rapid onset of star formation in molecular clouds requires rapid formation of dense fragments which can collapse individually before being overtaken by global gravitationally-driven flows. Many previous investigations have…

Astrophysics · Physics 2009-11-13 F. Heitsch , L. Hartmann , A. Burkert , ;

Advective trapping occurs when solute enters low velocity zones in heterogeneous porous media. Classical local modeling approaches combine the impact of slow advection and diffusion into a hydrodynamic dispersion coefficient and many…

Fluid Dynamics · Physics 2020-12-02 Juan J. Hidalgo , Insa Neuweiler , Marco Dentz

We introduce and analyze a model for the transport of particles or energy in extended lattice systems. The dynamics of the model acts on a discrete phase space at discrete times but has nonetheless some of the characteristic properties of…

Mathematical Physics · Physics 2015-06-12 Raphael Lefevere

The transport of individual entities through interconnected structures is a process of practical relevance both in biology and technology. Examples are given by diffusive dynamics of molecules in porous structures. In soft environments,…

Soft Condensed Matter · Physics 2026-02-09 Jakob Mihatsch , Andreas M. Menzel

We introduce two discrete models of a collection of colliding particles with stored momentum and study the asymptotic growth of the mean-square displacement of an active particle. We prove that the models are superdiffusive in one dimension…

Probability · Mathematics 2020-01-08 Edward Crane , Sean Ledger , Balint Toth