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This paper (parts I and II) provides an expository introduction to monotone and near-monotone dynamical systems associated to biochemical networks, those whose graphs are consistent or near-consistent. Many conclusions can be drawn from…

Molecular Networks · Quantitative Biology 2007-05-23 Eduardo D. Sontag

We present a comprehensive and versatile theoretical framework to study site and bond percolation on clustered and correlated random graphs. Our contribution can be summarized in three main points. (i) We introduce a set of iterative…

Statistical Mechanics · Physics 2015-12-16 Antoine Allard , Laurent Hébert-Dufresne , Jean-Gabriel Young , Louis J. Dubé

Intuitively, a tangle of large order in a graph is a highly-connected part of the graph, and it is known that if a graph has a tangle of large order then it has a large grid minor. Here we show that for any k, if G has a tangle of large…

Combinatorics · Mathematics 2013-08-01 Dániel Marx , Paul Seymour , Paul Wollan

This is a survey of some of the consequences of the recently introduced congruences on the theory of connectednesses (radical classes) and disconnectednesses (semisimple classes) of graphs and topological spaces. In particular, it is shown…

General Topology · Mathematics 2022-10-20 Stefan Veldsman

Real complex systems are inherently time-varying. Thanks to new communication systems and novel technologies, it is today possible to produce and analyze social and biological networks with detailed information on the time of occurrence and…

Physics and Society · Physics 2012-04-17 V. Nicosia , J. Tang , M. Musolesi , G. Russo , C. Mascolo , V. Latora

The binomial random bipartite graph $G(n,n,p)$ is the random graph formed by taking two partition classes of size $n$ and including each edge between them independently with probability $p$. It is known that this model exhibits a similar…

Combinatorics · Mathematics 2023-06-30 Tuan Anh Do , Joshua Erde , Mihyun Kang , Michael Missethan

This paper (parts I and II) provides an expository introduction to monotone and near-monotone dynamical systems associated to biochemical networks, those whose graphs are consistent or near-consistent. Many conclusions can be drawn from…

Molecular Networks · Quantitative Biology 2007-05-23 Eduardo D. Sontag

We give an affirmative answer to a long-standing conjecture of Thomassen, stating that every sufficiently highly connected graph has a $k$-vertex-connected orientation. We prove that a connectivity of order $O(k^2)$ suffices. As a key tool,…

Combinatorics · Mathematics 2025-03-12 Dániel Garamvölgyi , Tibor Jordán , Csaba Király , Soma Villányi

In this work we continue the investigation launched in [FHR16] of the structural properties of the structural properties of the Layers model, a dependent percolation model. Given an undirected graph $G=(V,E)$ and an integer $k$, let…

Probability · Mathematics 2018-02-27 Jonathan Hermon

A $k$-container $C(u, v)$ of a graph $G$ is a set of $k$ internally disjoint paths between $u$ and $v$. A $k$-container $C(u, v)$ of $G$ is a $k^*$-container if it is a spanning subgraph of $G$. A graph $G$ is $k^*$-connected if there…

Combinatorics · Mathematics 2016-06-17 Pingshan Li , Min Xu

We present and investigate a general model for inhomogeneous random digraphs with labeled vertices, where the arcs are generated independently, and the probability of inserting an arc depends on the labels of its endpoints and its…

Probability · Mathematics 2009-11-17 M. Bloznelis , F. Götze , J. Jaworski

We study the near-critical behavior of the sparse Erd\H{o}s-R\'enyi random graph $\mathcal{G}(n,p)$ on $n\gg1$ vertices, where the connection probability $p$ satisfies $np = 1+\theta(b_n^2/n)^{1/3}$, with $n^{3/10}\ll {b_n}\ll n^{1/2}$, and…

Probability · Mathematics 2023-12-29 Luisa Andreis , Gianmarco Bet , Maxence Phalempin

A linkage of order k of a graph G is a subgraph with k components, each of which is a path. A linkage is vital if it spans all vertices, and no other linkage connects the same pairs of end vertices. We give a characterization of the graphs…

Combinatorics · Mathematics 2011-07-19 Dillon Mayhew , Geoff Whittle , Stefan H. M. van Zwam

We consider a class of random, weighted networks, obtained through a redefinition of patterns in an Hopfield-like model and, by performing percolation processes, we get information about topology and resilience properties of the networks…

Statistical Mechanics · Physics 2015-05-30 Elena Agliari , Claudia Cioli , Enore Guadagnini

The topological (or graph) structures of real-world networks are known to be predictive of multiple dynamic properties of the networks. Conventionally, a graph structure is represented using an adjacency matrix or a set of hand-crafted…

Social and Information Networks · Computer Science 2016-10-21 Cheng Li , Xiaoxiao Guo , Qiaozhu Mei

In this paper we introduce a network model which evolves in time, and study its largest connected component. We consider a process of graphs $(G_t:t\in [0,1])$, where initially we start with a critical Erd\H{o}s-R\'enyi graph ER(n, 1/n),…

Probability · Mathematics 2017-11-06 Matthew I. Roberts , Bati Sengul

In this paper, we introduce a novel model for random hypergraphs based on weighted random connection models. In accordance with the standard theory for hypergraphs, this model is constructed from a bipartite graph. In our stochastic model,…

Probability · Mathematics 2025-10-01 Morten Brun , Christian Hirsch , Peter Juhasz , Moritz Otto

The giant $k$-core --- maximal connected subgraph of a network where each node has at least $k$ neighbors --- is important in the study of phase transitions and in applications of network theory. Unlike Erd\H{o}s-R\'enyi graphs and other…

Physics and Society · Physics 2017-01-25 Uttam Bhat , Munik Shrestha , Laurent Hébert-Dufresne

In this paper, we introduce a corresponding between bipartite graphs with a perfect matching and digraphs, which implicates an equivalent relation between the extendibility of bipartite graphs and the strongly connectivity of digraphs. Such…

Combinatorics · Mathematics 2010-11-22 Zan-Bo Zhang , Dingjun Lou

Comparative analyses of graph structured datasets underly diverse problems. Examples of these problems include identification of conserved functional components (biochemical interactions) across species, structural similarity of large…

Quantum Physics · Physics 2014-09-25 Anmer Daskin , Ananth Grama , Sabre Kais