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Many research questions can be answered quickly and efficiently using data already collected for previous research. This practice is called secondary data analysis (SDA), and has gained popularity due to lower costs and improved research…

Digital Libraries · Computer Science 2020-04-07 Yasith Jayawardana , Sampath Jayarathna

Error-correcting codes over sets, with applications to DNA storage, are studied. The DNA-storage channel receives a set of sequences, and produces a corrupted version of the set, including sequence loss, symbol substitution, symbol…

Information Theory · Computer Science 2021-07-12 Hengjia Wei , Moshe Schwartz

Over the last three to five years, it has become possible to generate machine learning synthetic data for healthcare-related uses. However, concerns have been raised about potential negative factors associated with the possibilities of…

Motivation: Modern genomics laboratories generate massive volumes of sequencing data, often resulting in significant storage costs. Genomics storage consists of duplicate files, temporary processing files, and redundant intermediate data.…

Genomics · Quantitative Biology 2025-11-27 Margot Celerie , Andrew Oldfield , William Ritchie

Bioinformatics research is characterized by voluminous and incremental datasets and complex data analytics methods. The machine learning methods used in bioinformatics are iterative and parallel. These methods can be scaled to handle big…

Computational Engineering, Finance, and Science · Computer Science 2015-06-17 Hirak Kashyap , Hasin Afzal Ahmed , Nazrul Hoque , Swarup Roy , Dhruba Kumar Bhattacharyya

Many researches demonstrated that the DNA methylation, which occurs in the context of a CpG, has strong correlation with diseases, including cancer. There is a strong interest in analyzing the DNA methylation data to find how to distinguish…

Genomics · Quantitative Biology 2020-01-29 Hong Yu , Zhanyu Ma

The synthesis of DNA strands remains the most costly part of the DNA storage system. Thus, to make DNA storage system more practical, the time and materials used in the synthesis process have to be optimized. We consider the most common…

Information Theory · Computer Science 2023-05-15 Johan Chrisnata , Han Mao Kiah , Van Long Phuoc Pham

Access to genomic data is highly regulated due to its sensitive nature. While safeguards are essential, cumbersome data access processes pose a significant barrier to the development of AI methods for genomics. Synthetic data generation can…

Cryptography and Security · Computer Science 2026-05-01 Daniil Filienko , Martine De Cock , Sikha Pentyala

Biologists study Diatoms, a fundamental algae, to assess the health of aquatic systems. Diatom specimens have traditionally been preserved on analog slides, where a single slide can contain thousands of these microscopic organisms.…

Information Retrieval · Computer Science 2024-11-04 Kio Polson , Marina Potapova , Uttam Meena , Chad Peiper , Joshua Brown , Joshua Agar , Jane Greenberg

Recent experiments have demonstrated the feasibility of storing digital information in macromolecules such as DNA and protein. However, the DNA storage channel is prone to errors such as deletions, insertions, and substitutions. During the…

Information Theory · Computer Science 2024-10-22 Aryan Abbasian , Mahtab Mirmohseni , Masoumeh Nasiri Kenari

In the current data driven era, synthetic data, artificially generated data that resembles the characteristics of real world data without containing actual personal information, is gaining prominence. This is due to its potential to…

Machine Learning · Computer Science 2023-09-06 Tshilidzi Marwala , Eleonore Fournier-Tombs , Serge Stinckwich

Over the past decades, statisticians and machine-learning researchers have developed literally thousands of new tools for the reduction of high-dimensional data in order to identify the variables most responsible for a particular trait.…

Machine Learning · Statistics 2012-05-31 Chamont Wang , Jana Gevertz , Chaur-Chin Chen , Leonardo Auslender

Selecting appropriate datasets is critical in modern computer vision. However, no general-purpose tools exist to evaluate the extent to which two datasets differ. For this, we propose representing images - and by extension datasets - using…

Computer Vision and Pattern Recognition · Computer Science 2023-04-21 Benjamin Ramtoula , Matthew Gadd , Paul Newman , Daniele De Martini

Humans are expert in the amount of sensory data they deal with each moment. Human brain not only analyses these data but also starts synthesizing new information from the existing data. The current age Big-data systems are needed not just…

Artificial Intelligence · Computer Science 2022-08-26 Amit Kumar Mishra

Synthetic data is essential for assessing clustering techniques, complementing and extending real data, and allowing for more complete coverage of a given problem's space. In turn, synthetic data generators have the potential of creating…

Machine Learning · Computer Science 2024-03-06 Nuno Fachada , Diogo de Andrade

In many Big Data applications today, information needs to be actively shared between systems managed by different organizations. To enable sharing Big Data at scale, developers would have to create dedicated server programs and glue…

Databases · Computer Science 2021-01-07 Xikui Wang , Michael J. Carey , Vassilis J. Tsotras

The pervasive nature of cloud-enabled big data storage solutions introduces new challenges in the identification, collection, analysis, preservation and archiving of digital evidences. Investigation of such complex platforms to locate and…

Cryptography and Security · Computer Science 2018-07-30 Yee-Yang Teing , Ali Dehghantanha , Kim-Kwang Raymond Choo

Cloud computing provides scientists a platform that can deploy computation and data intensive applications without infrastructure investment. With excessive cloud resources and a decision support system, large generated data sets can be…

Distributed, Parallel, and Cluster Computing · Computer Science 2016-01-27 Dong Yuan , Lizhen Cui , Xiao Liu , Erjiang Fu , Yun Yang

Modern biological science produces vast amounts of genomic sequence data. This is fuelling the need for efficient algorithms for sequence compression and analysis. Data compression and the associated techniques coming from information…

Data Structures and Algorithms · Computer Science 2011-09-05 Heba Afify , Muhammad Islam , Manal Abdel Wahed

DNA computing is an unconventional approach to computing that harnesses the parallelism and information storage capabilities of DNA molecules. It has emerged as a promising field with potential applications in solving a variety of…

Emerging Technologies · Computer Science 2024-06-04 Muhammad Asad Tariq , Rafay Junaid , Muhammad Mehdy Hasnain , Danyal Farhat
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