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In recent years, named entity recognition has always been a popular research in the field of natural language processing, while traditional deep learning methods require a large amount of labeled data for model training, which makes them…

Computation and Language · Computer Science 2022-03-29 Yuan Shi

Contemporary techniques in biology produce readouts for large numbers of genes simultaneously, the typical example being differential gene expression measurements. Moreover, those genes are often richly annotated using GO terms that…

Genomics · Quantitative Biology 2016-02-24 Fran Supek , Nives Škunca

The representation of sentences is a very important task. It can be used as a way to exchange data inter-applications. One main characteristic, that a notation must have, is a minimal size and a representative form. This can reduce the…

Computation and Language · Computer Science 2018-01-12 Abdelkrime Aries , Djamel Eddine Zegour , Walid Khaled Hidouci

Research on the role of Large Language Models (LLMs) in business models and services is limited. Previous studies have utilized econometric models, technical showcases, and literature reviews. However, this research is pioneering in its…

General Economics · Economics 2024-12-17 Jochen Wulf , Juerg Meierhofer

Most application development happens in the context of complex APIs; reference documentation for APIs has grown tremendously in variety, complexity, and volume, and can be difficult to navigate. There is a growing need to develop…

Software Engineering · Computer Science 2016-07-27 Niraj Kumar , Premkumar Devanbu

The French TreeBank developed at the University Paris 7 is the main source of morphosyntactic and syntactic annotations for French. However, it does not include explicit information related to named entities, which are among the most useful…

Computation and Language · Computer Science 2020-05-28 Pedro Javier Ortiz Suárez , Yoann Dupont , Benjamin Muller , Laurent Romary , Benoît Sagot

In Data Mining, the usefulness of association rules is strongly limited by the huge amount of delivered rules. In this paper we propose a new approach to prune and filter discovered rules. Using Domain Ontologies, we strengthen the…

Machine Learning · Computer Science 2009-10-05 Claudia Marinica , Fabrice Guillet , Henri Briand

Machine learning (ML) is revolutionizing the world, affecting almost every field of science and industry. Recent algorithms (in particular, deep networks) are increasingly data-hungry, requiring large datasets for training. Thus, the…

Machine Learning · Computer Science 2022-11-16 Chen Shani , Jonathan Zarecki , Dafna Shahaf

Ever-expanding volumes of biomedical text require automated semantic annotation techniques to curate and put to best use. An established field of research seeks to link mentions in text to knowledge bases such as those included in the UMLS…

Artificial Intelligence · Computer Science 2018-11-13 Genevieve Gorrell , Xingyi Song , Angus Roberts

With the increasing availability of new image registration approaches, an unbiased evaluation is becoming more needed so that clinicians can choose the most suitable approaches for their applications. Current evaluations typically use…

Computer Vision and Pattern Recognition · Computer Science 2020-03-24 Jie Luo , Guangshen Ma , Sarah Frisken , Parikshit Juvekar , Nazim Haouchine , Zhe Xu , Yiming Xiao , Alexandra Golby , Patrick Codd , Masashi Sugiyama , William Wells

Command-line bioinformatics tools remain essential for genomic analysis, yet their diversity in syntax and parameterization presents a persistent barrier to productive research. We present oxo-call, a Rust-based command-line assistant that…

Genomics · Quantitative Biology 2026-04-15 Yun Peng , Yujun Sun , Jia Ding , Bin Yan , Zhangyu Wang , Chunyang Wang , Chenyang Shu , Jian-Guo Zhou , Shixiang Wang

Large language models (LLMs) have demonstrated remarkable versatility across a wide range of natural language processing tasks and domains. One such task is Named Entity Recognition (NER), which involves identifying and classifying proper…

Digital Libraries · Computer Science 2026-04-29 Shibingfeng Zhang , Giovanni Colavizza

Nominal sets provide a foundation for reasoning about names. They are used primarily in syntax with binders, but also, e.g., to model automata over infinite alphabets. In this paper, nominal sets are related to nominal renaming sets, which…

Logic in Computer Science · Computer Science 2019-06-04 Joshua Moerman , Jurriaan Rot

The interaction between business models is used in consumer centric manner instead of using a producer centric approach for customizing the business process in cloud environment. The knowledge based human semantic web is used for…

Artificial Intelligence · Computer Science 2014-01-24 V. Karthikeyan , V. J. Vijayalakshmi , P. Jeyakumar

Motivation: Ontologies are widely used in biology for data annotation, integration, and analysis. In addition to formally structured axioms, ontologies contain meta-data in the form of annotation axioms which provide valuable pieces of…

Computation and Language · Computer Science 2018-05-01 Fatima Zohra Smaili , Xin Gao , Robert Hoehndorf

Searching for information about a specific person is an online activity frequently performed by many users. In most cases, users are aided by queries containing a name and sending back to the web search engines for finding their will.…

Computation and Language · Computer Science 2020-07-23 Aviad Elyashar , Rami Puzis , Michael Fire

Anomaly mining is an important problem that finds numerous applications in various real world domains such as environmental monitoring, cybersecurity, finance, healthcare and medicine, to name a few. In this article, I focus on two areas,…

Machine Learning · Computer Science 2021-06-01 Leman Akoglu

Taxonomies have been widely used in various machine learning and text mining systems to organize knowledge and facilitate downstream tasks. One critical challenge is that, as data and business scope grow in real applications, existing…

Computation and Language · Computer Science 2021-04-13 Xiangchen Song , Jiaming Shen , Jieyu Zhang , Jiawei Han

Against the background of explosive growth in data volume, velocity, and variety, I investigate the origins of the term "Big Data". Its origins are a bit murky and hence intriguing, involving both academics and industry, statistics and…

Econometrics · Economics 2021-01-05 Francis X. Diebold

Technology is generating a huge and growing availability of observa tions of diverse nature. This big data is placing data learning as a central scientific discipline. It includes collection, storage, preprocessing, visualization and,…

Other Statistics · Statistics 2018-06-12 José L. Torrecilla , Juan Romo