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Optimal Morse matchings reveal essential structures of cell complexes which lead to powerful tools to study discrete geometrical objects, in particular discrete 3-manifolds. However, such matchings are known to be NP-hard to compute on…
Counting linear extensions is a fundamental problem in poset theory. It is known to be #P-complete, with polynomial-time formulas available in special cases. In this work, we develop new recursive formulas for counting linear extensions of…
We consider extremal problems related to decks and multidecks of rooted binary trees (a.k.a. rooted phylogenetic tree shapes). Here, the deck (resp. multideck) of a tree $T$ refers to the set (resp. multiset) of leaf induced binary subtrees…
Link/knot invariants are series with integer coefficients, and it is a long-standing problem to get them positive and possessing cohomological interpretation. Constructing positive "superpolynomials" is not straightforward, especially for…
In this paper, we revisit the application of generating trees to the pattern avoidance problem for permutations. In particular, we study this problem for certain general sets of patterns and propose a new procedure leveraging the FinLabel…
This paper starts with an observation that two infinite series of simplicial complexes, which a priori do not seem to have anything to do with each other, have the same homotopy type. One series consists of the complexes of directed forests…
An involution over finite fields is a permutation polynomial whose inverse is itself. Owing to this property, involutions over finite fields have been widely used in applications such as cryptography and coding theory. As far as we know,…
Counting non-isomorphic tree-like multigraphs that include self-loops and multiple edges is an important problem in combinatorial enumeration, with applications in chemical graph theory, polymer science, and network modeling. Traditional…
A well studied problem in algebraic complexity theory is the determination of the complexity of problems relying on evaluations of bilinear maps. One measure of the complexity of a bilinear map (or 3-tensor) is the optimal number of…
Kirchhoff's matrix tree theorem is a well-known result that gives a formula for the number of spanning trees in a finite, connected graph in terms of the graph Laplacian matrix. A closely related result is Wilson's algorithm for putting the…
In this work, we study linear error-correcting codes against adversarial insertion-deletion (indel) errors. While most constructions for the indel model are nonlinear, linear codes offer compact representations, efficient encoding, and…
Neural networks with tree-based sentence encoders have shown better results on many downstream tasks. Most of existing tree-based encoders adopt syntactic parsing trees as the explicit structure prior. To study the effectiveness of…
Amplitudes in open topological string theory may be described completely by certain A-infinity-categories. We detail a general construction of all cyclic minimal models for a given A-infinity-algebra and apply this result to the case of N=2…
We give factorizations for weighted spanning tree enumerators of Cartesian products of complete graphs, keeping track of fine weights related to degree sequences and edge directions. Our methods combine Kirchhoff's Matrix-Tree Theorem with…
Alphabetic codes and binary search trees are combinatorial structures that abstract search procedures in ordered sets endowed with probability distributions. In this paper, we design new linear-time algorithms to construct alphabetic codes,…
Asymptotic analysis on some statistical properties of the random binary-tree model is developed. We quantify a hierarchical structure of branching patterns based on the Horton-Strahler analysis. We introduce a transformation of a binary…
There are several common ways to encode a tree as a matrix, such as the adjacency matrix, the Laplacian matrix (that is, the infinitesimal generator of the natural random walk), and the matrix of pairwise distances between leaves. Such…
The main goal of this paper is to construct the so-called Birkhoff-type solutions for linear ordinary differential equations with a spectral parameter. Such solutions play an important role in direct and inverse problems of spectral theory.…
We construct bijections giving three "codes" for trees. These codes follow naturally from the Matrix Tree Theorem of Tutte and have many advantages over the one produced by Prufer in 1918. One algorithm gives explicitly a bijection that is…
We give a new construction of nonlinear error-correcting codes over suitable finite fields k from the geometry of modular curves with many rational points over k, combining two recent improvements on Goppa's construction. The resulting…