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The manual creation of gold standards for named entity recognition and entity linking is time- and resource-intensive. Moreover, recent works show that such gold standards contain a large proportion of mistakes in addition to being…

Computation and Language · Computer Science 2018-11-02 Axel-Cyrille Ngonga Ngomo , Michael Röder , Diego Moussallem , Ricardo Usbeck , René Speck

De novo design seeks to generate molecules with required property profiles by virtual design-make-test cycles. With the emergence of deep learning and neural generative models in many application areas, models for molecular design based on…

Quantitative Methods · Quantitative Biology 2021-01-05 Nathan Brown , Marco Fiscato , Marwin H. S. Segler , Alain C. Vaucher

Machine-learning methods are gradually being adopted in a wide variety of social, economic, and scientific contexts, yet they are notorious for struggling with exact mathematics. A typical example is computer algebra, which includes tasks…

Machine Learning · Computer Science 2024-11-06 Lennart Dabelow , Masahito Ueda

Neural networks have a reputation for being better at solving statistical or approximate problems than at performing calculations or working with symbolic data. In this paper, we show that they can be surprisingly good at more elaborated…

Symbolic Computation · Computer Science 2019-12-04 Guillaume Lample , François Charton

Long-running service workloads (e.g. web search engine) and short-term data analysis workloads (e.g. Hadoop MapReduce jobs) co-locate in today's data centers. Developing realistic benchmarks to reflect such practical scenario of mixed…

Distributed, Parallel, and Cluster Computing · Computer Science 2015-12-07 Rui Han , Shulin Zhan , Chenrong Shao , Junwei Wang , Lizy K. John , Jiangtao Xu , Gang Lu , Lei Wang

We introduce SpDISTAL, a compiler for sparse tensor algebra that targets distributed systems. SpDISTAL combines separate descriptions of tensor algebra expressions, sparse data structures, data distribution, and computation distribution.…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-07-29 Rohan Yadav , Alex Aiken , Fredrik Kjolstad

PDE-to-solver code generation aims to automatically synthesize executable numerical solvers from partial differential equation (PDE) specifications. This task requires not only understanding the mathematical structure of PDEs, but also…

Existing code generation benchmarks for Large Language Models (LLMs) such as HumanEval and MBPP are designed to study LLMs' end-to-end performance, where the benchmarks feed a problem description in natural language as input and examine the…

Software Engineering · Computer Science 2025-02-27 Jiarong Wu , Songqiang Chen , Jialun Cao , Hau Ching Lo , Shing-Chi Cheung

How to evaluate the coding abilities of Large Language Models (LLMs) remains an open question. We find that existing benchmarks are poorly aligned with real-world code repositories and are insufficient to evaluate the coding abilities of…

Recent advances in artificial intelligence have demonstrated the learnability of symbolic computation through end-to-end deep learning. Given a sufficient number of examples of symbolic expressions before and after the target computation,…

Machine Learning · Computer Science 2025-06-11 Hiroshi Kera , Shun Arakawa , Yuta Sato

Summary: More sophisticated models are needed to address problems in bioscience, synthetic biology, and precision medicine. To help facilitate the collaboration needed for such models, the community developed the Simulation Experiment…

As dynamic and control systems become more complex, relying purely on numerical computations for systems analysis and design might become extremely expensive or totally infeasible. Computer algebra can act as an enabler for analysis and…

Systems and Control · Computer Science 2018-01-01 Masoud Abbaszadeh

Recent advances in probabilistic modelling have led to a large number of simulation-based inference algorithms which do not require numerical evaluation of likelihoods. However, a public benchmark with appropriate performance metrics for…

Machine Learning · Statistics 2021-04-12 Jan-Matthis Lueckmann , Jan Boelts , David S. Greenberg , Pedro J. Gonçalves , Jakob H. Macke

This paper presents a generalised symbolic algorithm for solving systems of linear algebraic equations with multi-diagonal coefficient matrices. The algorithm is given in a pseudocode. A theorem which gives the condition for correctness of…

Symbolic Computation · Computer Science 2026-05-22 Milena Veneva

Symbolic Computation and Satisfiability Checking are two research areas, both having their individual scientific focus but sharing also common interests in the development, implementation and application of decision procedures for…

Various tasks, such as summarization, multi-hop question answering, or coreference resolution, are naturally phrased over collections of real-world documents. Such tasks present a unique set of challenges, revolving around the lack of…

Computation and Language · Computer Science 2024-06-25 Gili Lior , Avi Caciularu , Arie Cattan , Shahar Levy , Ori Shapira , Gabriel Stanovsky

Algebraic effects and handlers are a powerful abstraction to build non-local control-flow mechanisms such as resumable exceptions, lightweight threads, co-routines, generators, and asynchronous I/O. All of such features have very evolved…

Logic in Computer Science · Computer Science 2023-02-08 Tiago Soares , Mário Pereira

Reproducibility and reusability of the results of data-based modeling studies are essential. Yet, there has been -- so far -- no broadly supported format for the specification of parameter estimation problems in systems biology. Here, we…

Formal verification via interactive theorem proving is increasingly used to ensure the correctness of critical systems, yet constructing large proof scripts remains highly manual and limits scalability. Advances in large language models…

Artificial Intelligence · Computer Science 2026-05-08 Baoding He , Zenan Li , Wei Sun , Yuan Yao , Taolue Chen , Xiaoxing Ma , Zhendong Su

As language models master existing reasoning benchmarks, we need new challenges to evaluate their cognitive frontiers. Puzzle-solving events are rich repositories of challenging multimodal problems that test a wide range of advanced…

Artificial Intelligence · Computer Science 2025-02-17 Clinton J. Wang , Dean Lee , Cristina Menghini , Johannes Mols , Jack Doughty , Adam Khoja , Jayson Lynch , Sean Hendryx , Summer Yue , Dan Hendrycks