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MatlabMPI is a Matlab implementation of the Message Passing Interface (MPI) standard and allows any Matlab program to exploit multiple processors. MatlabMPI currently implements the basic six functions that are the core of the MPI…

Astrophysics · Physics 2007-05-23 Jeremy Kepner

MPI+Threads, embodied by the MPI/OpenMP hybrid programming model, is a parallel programming paradigm where threads are used for on-node shared-memory parallelization and MPI is used for multi-node distributed-memory parallelization. OpenMP…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-01-31 Hui Zhou , Ken Raffenetti , Junchao Zhang , Yanfei Guo , Rajeev Thakur

Parallel programming remains a daunting challenge, from the struggle to express a parallel algorithm without cluttering the underlying synchronous logic, to describing which devices to employ in a calculation, to correctness. Over the…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-08-10 Patrick Diehl , Steven R. Brandt , Hartmut Kaiser

Existing GPU libraries often struggle to fully exploit the parallel resources and on-chip memory (SRAM) of GPUs when chaining multiple GPU functions as individual kernels. While Kernel Fusion (KF) techniques like Horizontal Fusion (HF) and…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-09-09 Oscar Amoros , Albert Andaluz , Johnny Nunez , Antonio J. Pena

Message Passing Interface (MPI) plays a crucial role in distributed memory parallelization across multiple nodes. However, parallelizing MPI code manually, and specifically, performing domain decomposition, is a challenging, error-prone…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-08-31 Nadav Schneider , Tal Kadosh , Niranjan Hasabnis , Timothy Mattson , Yuval Pinter , Gal Oren

Multiresolution Matrix Factorization (MMF) was recently introduced as a method for finding multiscale structure and defining wavelets on graphs/matrices. In this paper we derive pMMF, a parallel algorithm for computing the MMF…

Numerical Analysis · Computer Science 2015-07-17 Risi Kondor , Nedelina Teneva , Pramod K. Mudrakarta

Parallel parameterized complexity theory studies how fixed-parameter tractable (fpt) problems can be solved in parallel. Previous theoretical work focused on parallel algorithms that are very fast in principle, but did not take into account…

Data Structures and Algorithms · Computer Science 2019-02-21 Max Bannach , Malte Skambath , Till Tantau

New trends towards multiple core processors imply using standard programming models to develop efficient, reliable and portable programs for distributed memory multiprocessors and workstation PC clusters. Message passing using MPI is widely…

Programming Languages · Computer Science 2013-11-05 Alaa I. Elnashar

The advent of modern data processing has led to an increasing tendency towards interdisciplinarity, which frequently involves the importation of different technical approaches. Consequently, there is an urgent need for a unified data…

Machine Learning · Computer Science 2024-06-04 Chen Zhang , Lecheng Jia , Wei Zhang , Ning Wen

Particle filter (PF) sequential Monte Carlo (SMC) methods are very attractive for the estimation of parameters of time dependent systems where the data is either not all available at once, or the range of time constants is wide enough to…

Computation · Statistics 2019-11-25 Andrea Arnold , Daniela Calvetti , Erkki Somersalo

We present a simple and easy to apply methodology for using high-level self-submitting parallel job queues in an MPI environment. Using C++, we implemented a library of functions, MPQueue, both for testing our concepts and for use in real…

Distributed, Parallel, and Cluster Computing · Computer Science 2012-04-23 John M. Neuberger , Nandor Sieben , James W. Swift

Matrix factorization (MF) is employed by many popular algorithms, e.g., collaborative filtering. The emerging GPU technology, with massively multicore and high intra-chip memory bandwidth but limited memory capacity, presents an opportunity…

Distributed, Parallel, and Cluster Computing · Computer Science 2016-10-25 Wei Tan , Liangliang Cao , Liana Fong

The purpose of this book is to help you program shared-memory parallel systems without risking your sanity. Nevertheless, you should think of the information in this book as a foundation on which to build, rather than as a completed…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-06-13 Paul E. McKenney

We propose a parareal based time parallelization scheme in the phase-space for the particle-in-Fourier (PIF) discretization of the Vlasov-Poisson system used in kinetic plasma simulations. We use PIF with a coarse tolerance for the…

Numerical Analysis · Mathematics 2025-06-17 Sriramkrishnan Muralikrishnan , Robert Speck

We present POLO --- a C++ library for large-scale parallel optimization research that emphasizes ease-of-use, flexibility and efficiency in algorithm design. It uses multiple inheritance and template programming to decompose algorithms into…

Optimization and Control · Mathematics 2018-10-09 Arda Aytekin , Martin Biel , Mikael Johansson

This paper introduces a novel feedback-control based particle filter for the solution of the filtering problem with data association uncertainty. The particle filter is referred to as the joint probabilistic data association-feedback…

Numerical Analysis · Mathematics 2013-03-07 Tao Yang , Geng Huang , Prashant G. Mehta

Parallel programming models exist as an abstraction of hardware and memory architectures. There are several parallel programming models in commonly use; they are shared memory model, thread model, message passing model, data parallel model,…

Software Engineering · Computer Science 2010-04-28 Bala Dhandayuthapani Veerasamy

Dataset storage, exchange, and access play a critical role in scientific applications. For such purposes netCDF serves as a portable and efficient file format and programming interface, which is popular in numerous scientific application…

Distributed, Parallel, and Cluster Computing · Computer Science 2007-05-23 Jianwei Li , Wei-keng Liao , Alok Choudhary , Robert Ross , Rajeev Thakur , William Gropp , Rob Latham

As we have entered Exascale computing, the faults in high-performance systems are expected to increase considerably. To compensate for a higher failure rate, the standard checkpoint/restart technique would need to create checkpoints at a…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-10-26 Sarthak Joshi , Sathish Vadhiyar

This paper presents the first parallel implementation of the novel "Interpolated Factored Green Function" (IFGF) method introduced recently for the accelerated evaluation of discrete integral operators arising in wave scattering and other…

Numerical Analysis · Mathematics 2022-05-12 Christoph Bauinger , Oscar P. Bruno