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Reproducibility is essential to reliable scientific discovery in high-throughput experiments. In this work we propose a unified approach to measure the reproducibility of findings identified from replicate experiments and identify putative…

Applications · Statistics 2011-10-24 Qunhua Li , James B. Brown , Haiyan Huang , Peter J. Bickel

Competitive programming benchmarks are widely used in scenarios such as programming contests and large language model assessments. However, the growing presence of duplicate or highly similar problems raises concerns not only about…

Software Engineering · Computer Science 2025-10-28 Han Deng , Yuan Meng , Shixiang Tang , Wanli Ouyang , Xinzhu Ma

Diffusion models are a class of generative models that learn to synthesize samples by inverting a diffusion process that gradually maps data into noise. While these models have enjoyed great success recently, a full theoretical…

Machine Learning · Computer Science 2023-09-22 Raja Marjieh , Ilia Sucholutsky , Thomas A. Langlois , Nori Jacoby , Thomas L. Griffiths

To identify novel dynamic patterns of gene expression, we develop a statistical method to cluster noisy measurements of gene expression collected from multiple replicates at multiple time points, with an unknown number of clusters. We…

Applications · Statistics 2013-12-02 Audrey Qiuyan Fu , Steven Russell , Sarah J. Bray , Simon Tavaré

Part of the success of diffusion models stems from their ability to perform iterative refinement, i.e., repeatedly correcting outputs during generation. However, modern masked discrete diffusion lacks this capability: when a token is…

Machine Learning · Computer Science 2026-02-10 Guanghan Wang , Yair Schiff , Subham Sekhar Sahoo , Volodymyr Kuleshov

Model-Based Diagnosis deals with the identification of the real cause of a system's malfunction based on a formal system model and observations of the system behavior. When a malfunction is detected, there is usually not enough information…

Artificial Intelligence · Computer Science 2017-11-16 Patrick Rodler , Wolfgang Schmid , Konstantin Schekotihin

The rise of "big data" has led to the frequent need to process and store datasets containing large numbers of high dimensional observations. Due to storage restrictions, these observations might be recorded in a lossy-but-sparse manner,…

Applications · Statistics 2018-09-12 James Pitkin , Gordon Ross , Ioanna Manolopoulou

The results from most machine learning experiments are used for a specific purpose and then discarded. This results in a significant loss of information and requires rerunning experiments to compare learning algorithms. This also requires…

Machine Learning · Statistics 2014-06-06 Michael R. Smith , Andrew White , Christophe Giraud-Carrier , Tony Martinez

In this work, we leverage informative embeddings from foundational models for unsupervised anomaly detection in medical imaging. For small datasets, a memory-bank of normative features can directly be used for anomaly detection which has…

Computer Vision and Pattern Recognition · Computer Science 2025-09-25 Nico Schulthess , Ender Konukoglu

Novelty detection is the unsupervised problem of identifying anomalies in test data which significantly differ from the training set. Novelty detection is one of the classic challenges in Machine Learning and a core component of several…

Machine Learning · Computer Science 2019-03-06 Rémi Domingues

A main challenge of data-driven sciences is how to make maximal use of the progressively expanding databases of experimental datasets in order to keep research cumulative. We introduce the idea of a modeling-based dataset retrieval engine…

Quantitative Methods · Quantitative Biology 2015-06-19 Ali Faisal , Jaakko Peltonen , Elisabeth Georgii , Johan Rung , Samuel Kaski

Predictive Autoscaling is used to forecast the workloads of servers and prepare the resources in advance to ensure service level objectives (SLOs) in dynamic cloud environments. However, in practice, its prediction task often suffers from…

Machine Learning · Computer Science 2023-09-06 Hongyan Hao , Zhixuan Chu , Shiyi Zhu , Gangwei Jiang , Yan Wang , Caigao Jiang , James Zhang , Wei Jiang , Siqiao Xue , Jun Zhou

Despite deep learning has achieved great success, it often relies on a large amount of training data with accurate labels, which are expensive and time-consuming to collect. A prominent direction to reduce the cost is to learn with noisy…

Machine Learning · Computer Science 2024-01-31 Chuanyang Hu , Shipeng Yan , Zhitong Gao , Xuming He

The existence of noisy labels in real-world data negatively impacts the performance of deep learning models. Although much research effort has been devoted to improving robustness to noisy labels in classification tasks, the problem of…

Computer Vision and Pattern Recognition · Computer Science 2021-04-13 Chang Liu , Han Yu , Boyang Li , Zhiqi Shen , Zhanning Gao , Peiran Ren , Xuansong Xie , Lizhen Cui , Chunyan Miao

For data assumed to come from a finite mixture with an unknown number of components, it has become common to use Dirichlet process mixtures (DPMs) not only for density estimation, but also for inferences about the number of components. The…

Statistics Theory · Mathematics 2013-01-15 Jeffrey W. Miller , Matthew T. Harrison

Model distillation has been a popular method for producing interpretable machine learning. It uses an interpretable "student" model to mimic the predictions made by the black box "teacher" model. However, when the student model is sensitive…

Machine Learning · Statistics 2023-05-01 Yunzhe Zhou , Peiru Xu , Giles Hooker

Recent advances in dense retrieval techniques have offered the promise of being able not just to re-rank documents using contextualised language models such as BERT, but also to use such models to identify documents from the collection in…

Information Retrieval · Computer Science 2021-08-25 Nicola Tonellotto , Craig Macdonald

We propose the Deep Distance Measurement Method (DDMM) to improve retrieval accuracy in unsupervised multivariate time series similarity retrieval. DDMM enables learning of minute differences within states in the entire time series and…

Machine Learning · Computer Science 2026-03-16 Susumu Naito , Kouta Nakata , Yasunori Taguchi

Recent work has shown that small distilled language models are strong competitors to models that are orders of magnitude larger and slower in a wide range of information retrieval tasks. This has made distilled and dense models, due to…

Information Retrieval · Computer Science 2022-12-13 Guilherme Moraes Rosa , Luiz Bonifacio , Vitor Jeronymo , Hugo Abonizio , Marzieh Fadaee , Roberto Lotufo , Rodrigo Nogueira

Dense retrieval, which encodes queries and documents into a single dense vector, has become the dominant neural retrieval approach due to its simplicity and compatibility with fast approximate nearest neighbor algorithms. As the tasks dense…

Information Retrieval · Computer Science 2026-02-06 Julian Killingback , Mahta Rafiee , Madine Manas , Hamed Zamani