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Pairwise sequence comparison is one of the most fundamental problems in string processing. The most common metric to quantify the similarity between sequences S and T is edit distance, d(S,T), which corresponds to the number of characters…

Data Structures and Algorithms · Computer Science 2024-07-04 Ahmet Cemal Alıcıoğlu , Can Alkan

Reminiscent of the parity function in network coding for the butterfly network, it is shown that forwarding an even/odd indicator bit for a scalar quantization of a relay observation recovers 1 bit of information at the two destinations in…

Information Theory · Computer Science 2010-09-10 Peyman Razaghi , Giuseppe Caire

Decentralized optimization methods enable on-device training of machine learning models without a central coordinator. In many scenarios communication between devices is energy demanding and time consuming and forms the bottleneck of the…

Optimization and Control · Mathematics 2020-11-04 Dmitry Kovalev , Anastasia Koloskova , Martin Jaggi , Peter Richtarik , Sebastian U. Stich

The edit distance between two strings is defined as the smallest number of insertions, deletions, and substitutions that need to be made to transform one of the strings to another one. Approximating edit distance in subquadratic time is…

Data Structures and Algorithms · Computer Science 2018-04-27 Mahdi Boroujeni , Soheil Ehsani , Mohammad Ghodsi , MohammadTaghi HajiAghayi , Saeed Seddighin

Calculation of near-neighbor interactions among high dimensional, irregularly distributed data points is a fundamental task to many graph-based or kernel-based machine learning algorithms and applications. Such calculations, involving…

The field of dynamic graph algorithms aims at achieving a thorough understanding of real-world networks whose topology evolves with time. Traditionally, the focus has been on the classic sequential, centralized setting where the main…

Data Structures and Algorithms · Computer Science 2021-09-23 Shiri Antaki , Quanquan C. Liu , Shay Solomon

Two parties observing correlated data seek to exchange their data using interactive communication. How many bits must they communicate? We propose a new interactive protocol for data exchange which increases the communication size in steps…

Information Theory · Computer Science 2017-11-15 Himanshu Tyagi , Pramod Viswanath , Shun Watanabe

Massive co-located devices require new paradigms to allow proper network connectivity. Internet of things (IoT) is the paradigm that offers a solution for the inter-connectivity of devices, but in dense IoT networks time synchronization is…

Information Theory · Computer Science 2017-02-02 Maria Antonieta Alvarez , Umberto Spagnolini

We consider optimal distributed computation of a given function of distributed data. The input (data) nodes and the sink node that receives the function form a connected network that is described by an undirected weighted network graph. The…

Distributed, Parallel, and Cluster Computing · Computer Science 2015-07-15 Pooja Vyavahare , Nutan Limaye , D. Manjunath

The sequence reconstruction problem, introduced by Levenshtein in 2001, considers a communication scenario where the sender transmits a codeword from some codebook and the receiver obtains multiple noisy reads of the codeword. The common…

Information Theory · Computer Science 2020-06-16 Kui Cai , Han Mao Kiah , Tuan Thanh Nguyen , Eitan Yaakobi

This paper presents a new approach to statistical similarity assessment based on sequence alignment. The algorithm performs mutual matching of two random sequences by successively searching for common elements and by applying sequence…

Signal Processing · Electrical Eng. & Systems 2021-06-09 Jakub Nikonowicz , Łukasz Matuszewski , Paweł Kubczak

An insdel refers to a deletion or an insertion, and an edit refers to an insdel or a substitution. In this paper, we consider the segmented single-insdel (resp. single-edit) channel, where the channel's input bit stream is partitioned into…

Information Theory · Computer Science 2024-05-08 Zhen Li , Xuan He , Xiaohu Tang

In this paper we investigate the \emph{approximate string matching problem} when the allowed edit operations are \emph{non-overlapping unbalanced translocations of adjacent factors}. Such kind of edit operations take place when two adjacent…

Data Structures and Algorithms · Computer Science 2021-01-05 Domenico Cantone , Simone Faro , Arianna Pavone

We propose in this article to build up a collaboration between a deep neural network and a human in the loop to swiftly obtain accurate segmentation maps of remote sensing images. In a nutshell, the agent iteratively interacts with the…

Computer Vision and Pattern Recognition · Computer Science 2022-01-05 Gaston Lenczner , Adrien Chan-Hon-Tong , Bertrand Le Saux , Nicola Luminari , Guy Le Besnerais

The simulation of large ensembles of particles is usually parallelized by partitioning the domain spatially and using message passing to communicate between the processes handling neighboring subdomains. The particles are represented as…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-08-03 Sebastian Eibl , Ulrich Rüde

Document exchange and error correcting codes are two fundamental problems regarding communications. In the first problem, Alice and Bob each holds a string, and the goal is for Alice to send a short sketch to Bob, so that Bob can recover…

Data Structures and Algorithms · Computer Science 2019-04-30 Kuan Cheng , Zhengzhong Jin , Xin Li , Ke Wu

Recently we presented the first algorithm for maintaining the set of nodes reachable from a source node in a directed graph that is modified by edge deletions with $o(mn)$ total update time, where $m$ is the number of edges and $n$ is the…

Data Structures and Algorithms · Computer Science 2016-12-13 Monika Henzinger , Sebastian Krinninger , Danupon Nanongkai

We study spreading processes in temporal graphs, i. e., graphs whose connections change over time. These processes naturally model real-world phenomena such as infectious diseases or information flows. More precisely, we investigate how…

Data Structures and Algorithms · Computer Science 2021-07-21 Hendrik Molter , Malte Renken , Philipp Zschoche

In recent years, hardware implementations of Ising machines have emerged as a viable alternative to quantum computing for solving hard optimization problems among other applications. Unlike quantum hardware, dense connectivity can be…

We show that the edit distance between two run-length encoded strings of compressed lengths $m$ and $n$ respectively, can be computed in $\mathcal{O}(mn\log(mn))$ time. This improves the previous record by a factor of…

Data Structures and Algorithms · Computer Science 2019-05-06 Raphaël Clifford , Paweł Gawrychowski , Tomasz Kociumaka , Daniel P. Martin , Przemysław Uznański
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