Related papers: Space Efficient Linear Time Lempel-Ziv Factorizati…
A classic data structure problem is to preprocess a string T of length $n$ so that, given a query $q$, we can quickly find all substrings of T with Hamming distance at most $k$ from the query string. Variants of this problem have seen…
Advances in DNA sequencing technology will soon result in databases of thousands of genomes. Within a species, individuals' genomes are almost exact copies of each other; e.g., any two human genomes are 99.9% the same. Relative Lempel-Ziv…
Given a positive \(\epsilon \leq 1\) and read-only access to a string \(S [1..n]\) whose LZ77 parse consists of $z$ phrases, with high probability we can build an LZ77-like parse of $S$ that consists of $\Oh{z / \epsilon}$ phrases using…
Random access to highly compressed strings -- represented by straight-line programs or Lempel-Ziv parses, for example -- is a well-studied topic. Random access to such strings in strongly sublogarithmic time is impossible in the worst case,…
We present new algorithms to detect and correct errors in the lower-upper factorization of a matrix, or the triangular linear system solution, over an arbitrary field. Our main algorithms do not require any additional information or…
We show an O*((l+1)^n)-time algorithm for the channel assignment problem, where l is the maximum edge weight. This improves on the previous O*((l+2)^n)-time algorithm by Kral, as well as algorithms for important special cases, like…
We show that given the order of a single element selected uniformly at random from $\mathbb Z_N^*$, we can with very high probability, and for any integer $N$, efficiently find the complete factorization of $N$ in polynomial time. This…
The best deterministic unconditionally proven integer factorization algorithms have exponential running time complexities of O(N^(1/4)) arithmetic operations, and conditional on the Riemann hypothesis, there is a deterministic algorithm of…
We consider so-called $N$-fold integer programs (IPs) of the form $\max\{c^T x : Ax = b, \ell \leq x \leq u, x \in \mathbb Z^{nt}\}, where $A \in \mathbb Z^{(r+sn)\times nt} consists of $n$ arbitrary matrices $A^{(i)} \in \mathbb Z^{r\times…
We design a space-efficient algorithm for performing depth-first search traversal(DFS) of a graph in $O(m+n\log^* n)$ time using $O(n)$ bits of space. While a normal DFS algorithm results in a DFS-tree (in case the graph is connected), our…
In this paper, we develop a simple and fast online algorithm for solving a class of binary integer linear programs (LPs) arisen in general resource allocation problem. The algorithm requires only one single pass through the input data and…
The longest common prefix (LCP) array is a versatile auxiliary data structure in indexed string matching. It can be used to speed up searching using the suffix array (SA) and provides an implicit representation of the topology of an…
The integer complexity $f(n)$ of a positive integer $n$ is defined as the minimum number of 1's needed to represent $n$, using additions, multiplications and parentheses. We present two simple and faster algorithms for computing the integer…
In this paper, a fully compressed pattern matching problem is studied. The compression is represented by straight-line programs (SLPs), i.e. a context-free grammars generating exactly one string; the term fully means that both the pattern…
A new Las Vegas algorithm is presented for the composition of two polynomials modulo a third one, over an arbitrary field. When the degrees of these polynomials are bounded by $n$, the algorithm uses $O(n^{1.43})$ field operations, breaking…
This paper reformulates the problem of finding a longest common increasing subsequence of the two given input sequences in a very succinct way. An extremely simple linear space algorithm based on the new formula can find a longest common…
The pressing need for eficient compression schemes for XML documents has recently been focused on stack computation [6, 9], and in particular calls for a formulation of information-lossless stack or pushdown compressors that allows a formal…
Given a simple polygon $P$ consisting of $n$ vertices, we study the problem of designing space-efficient algorithms for computing (i) the visibility polygon of a point inside $P$, (ii) the weak visibility polygon of a line segment inside…
We consider the Abelian longest common factor problem in two scenarios: when input strings are uncompressed and are of size $n$, and when the input strings are run-length encoded and their compressed representations have size at most $m$.…
A new integer deterministic factorization algorithm, rated at arithmetic operations to $O(N^{1/6+\varepsilon})$ arithmetic operations, is presented in this note. Equivalently, given the least $(\log N)/6$ bits of a factor of the balanced…