Related papers: A note on monadic datalog on unranked trees
We study the problem of enumerating answers of Conjunctive Queries ranked according to a given ranking function. Our main contribution is a novel algorithm with small preprocessing time, logarithmic delay, and non-trivial space usage during…
We estimate the size of a labelled tree by comparing the amount of (labelled) nodes with the size of the set of labels. Roughly speaking, a exponentially big labelled tree, is any labelled tree that has an exponential gap between its size,…
Phylogenetic (evolutionary) trees and networks are leaf-labeled graphs that are widely used to represent the evolutionary relationships between entities such as species, languages, cancer cells, and viruses. To reconstruct and analyze…
We propose $\omega$MSO$\Join$BAPA, an expressive logic for describing countable structures, which subsumes and transcends both Counting Monadic Second-Order Logic (CMSO) and Boolean Algebra with Presburger Arithmetic (BAPA). We show that…
Recent work has proven the existence of extreme inbreeding in a European ancestry sample taken from the contemporary UK population \cite{nature_01}. This result brings our attention again to a math problem related to inbreeding family trees…
Recently, there has been a growing interest in the relationships between unrooted and rooted phylogenetic networks. In this context, a natural question to ask is if an unrooted phylogenetic network U can be oriented as a rooted phylogenetic…
Connected acyclic graphs (trees) are data objects that hierarchically organize categories. Collections of trees arise in a diverse variety of fields, including evolutionary biology, public health, machine learning, social sciences and…
Morrill and Valentin in the paper "Computational coverage of TLG: Nonlinearity" considered an extension of the Lambek calculus enriched by a so-called "exponential" modality. This modality behaves in the "relevant" style, that is, it allows…
This paper contains a classification of countable lower 1-transitive linear orders. The notion of lower 1-transitivity generalises that of 1-transitivity for linear orders, and is essential for the structure theory of 1-transitive trees.…
A non-deterministic recursion scheme recognizes a language of finite trees. This very expressive model can simulate, among others, higher-order pushdown automata with collapse. We show decidability of the diagonal problem for schemes. This…
Given an undirected graph representing similarities between a set of items and an additive measure evaluating the items, we treat the position of a special subset of items in an ordinal ranking through a collection of combinatorial…
We show that deciding boundedness (aka FO-rewritability) of monadic single rule datalog programs (sirups) is 2Exp-hard, which matches the upper bound known since 1988 and finally settles a long-standing open problem. We obtain this result…
We study alternating register automata on data words and data trees in relation to logics. A data word (resp. data tree) is a word (resp. tree) whose every position carries a label from a finite alphabet and a data value from an infinite…
Traversals are commonly seen in tree data structures, and performance-enhancing transformations between tree traversals are critical for many applications. Existing approaches to reasoning about tree traversals and their transformations are…
We solve the covering problem for Demuth randomness, showing that a computably enumerable set is computable from a Demuth random set if and only if it is strongly jump-traceable. We show that on the other hand, the class of sets which form…
We propose a method for the classification of objects that are structured as random trees. Our aim is to model a distribution over the node label assignments in settings where the tree data structure is associated with node attributes…
We consider a specific class of tree structures that can represent basic structures in linguistics and computer science such as XML documents, parse trees, and treebanks, namely, finite node-labeled sibling-ordered trees. We present…
We investigate the decidability of the monadic second-order (MSO) theory of the structure $\langle \mathbb{N};<,P_1, \ldots,P_d \rangle$, for various unary predicates $P_1,\ldots,P_d \subseteq \mathbb{N}$. We focus in particular on…
Decision trees are simple, yet powerful, classification models used to classify categorical and numerical data, and, despite their simplicity, they are commonly used in operations research and management, as well as in knowledge mining.…
We consider the new extension of population protocols with unordered data and show that the corresponding well-specification problem and therefore also other verification problems are undecidable.