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The advent of advanced crystallographic techniques has shifted structural biology from static, single-conformer models toward probing protein dynamics. Extracting cooperative motions from temporally and spatially averaged electron density…

Quantitative Methods · Quantitative Biology 2025-09-08 Avinash Mandaiya , Veit Elser

In this article, we revisit iterative methods for solving the inverse problem of photoacoustic tomography in free space. Recently, there have been interesting developments on explicit formulations of the adjoint operator, demonstrating that…

Analysis of PDEs · Mathematics 2017-05-16 Markus Haltmeier , Linh V. Nguyen

Many optimization problems require hyperparameters, i.e., parameters that must be pre-specified in advance, such as regularization parameters and parametric regularizers in variational regularization methods for inverse problems, and…

Optimization and Control · Mathematics 2025-10-09 Matthias J. Ehrhardt , Silvia Gazzola , Sebastian J. Scott

Many applications involving porous media--notably reservoir engineering and geologic applications--involve tight coupling between multiphase fluid flow, transport, and poromechanical deformation. While numerical models for these processes…

An approach is given for solving large linear systems that combines Krylov methods with use of two different grid levels. Eigenvectors are computed on the coarse grid and used to deflate eigenvalues on the fine grid. GMRES-type methods are…

Numerical Analysis · Mathematics 2020-05-08 Ronald B. Morgan , Travis Whyte , Walter Wilcox , Zhao Yang

We address the inverse problem of cosmic large-scale structure reconstruction from a Bayesian perspective. For a linear data model, a number of known and novel reconstruction schemes, which differ in terms of the underlying signal prior,…

Astrophysics · Physics 2009-11-06 F. S. Kitaura , T. A. Ensslin

In the present work, we propose new tensor Krylov subspace method for ill posed linear tensor problems such as in color or video image restoration. Those methods are based on the tensor-tensor discrete cosine transform that gives fast…

Numerical Analysis · Mathematics 2021-03-23 M. El Guide , A. El Ichi , K. Jbilou

This paper gives an analysis and an evaluation of linear algebra operations on Graphics Processing Unit (GPU) with complex number arithmetics with double precision. Knowing the performance of these operations, iterative Krylov methods are…

Numerical Analysis · Mathematics 2021-12-14 Abal-Kassim Cheik Ahamed , Frederic Magoules

Shifted Laplacian multigrid preconditioner has become a tool du jour for solving highly indefinite Helmholtz equations. The idea is to add a complex damping to the original Helmholtz operator and then apply a multigrid processing to the…

Numerical Analysis · Mathematics 2013-12-11 Ira Livshits

This paper introduces a preconditioned method designed to comprehensively address the saddle point system with the aim of improving convergence efficiency. In the preprocessor construction phase, a technical approach for solving the…

Numerical Analysis · Mathematics 2024-04-10 Juan Zhang , Yiyi Luo

This paper presents an efficient Krylov subspace iterative solver for the three-dimensional (3D) Helmholtz equation with non-constant coefficients and absorbing boundary conditions, combining high-resolution compact schemes with low-order…

Numerical Analysis · Mathematics 2026-02-10 Yury Gryazin , Ron Gonzales , Xiaoye Sherry Li

In this thesis, the numerical solution of three different classes of problems have been studied. Specifically, new techniques have been proposed and their theoretical analysis has been performed, accompanied by a wide set of numerical…

Numerical Analysis · Mathematics 2022-05-03 Nikos Barakitis

In this paper we construct and analyse a level-dependent coarsegrid correction scheme for indefinite Helmholtz problems. This adapted multigrid method is capable of solving the Helmholtz equation on the finest grid using a series of…

Numerical Analysis · Mathematics 2013-09-09 Siegfried Cools , Bram Reps , Wim Vanroose

At physical light quark masses, efficient linear solvers are crucial for carrying out the millions of inversions of the Dirac matrix required for obtaining high statistics in quark correlation functions. Adaptive algebraic multi-grid…

High Energy Physics - Lattice · Physics 2022-01-12 Shuhei Yamamoto , Simone Bacchio , Jacob Finkenrath

Pipelined Krylov subspace methods (also referred to as communication-hiding methods) have been proposed in the literature as a scalable alternative to classic Krylov subspace algorithms for iteratively computing the solution to a large…

Numerical Analysis · Computer Science 2019-05-16 Siegfried Cools , Jeffrey Cornelis , Wim Vanroose

We propose an augmented Lagrangian-based preconditioner to accelerate the convergence of Krylov subspace methods applied to linear systems of equations with a block three-by-three structure such as those arising from mixed finite element…

Numerical Analysis · Mathematics 2023-10-26 Fatemeh P. A. Beik , Michele Benzi

Krylov subspace recycling is a powerful tool for solving long series of large, sparse linear systems that change slowly. In PDE constrained shape optimization, these appear naturally, as hundreds or more optimization steps are needed with…

Numerical Analysis · Mathematics 2020-10-23 Matthias Bolten , Eric de Sturler , Camilla Hahn

Transform Invariant Low-rank Textures (TILT) is a novel and powerful tool that can effectively rectify a rich class of low-rank textures in 3D scenes from 2D images despite significant deformation and corruption. The existing algorithm for…

Computer Vision and Pattern Recognition · Computer Science 2013-01-30 Xiang Ren , Zhouchen Lin

Seismic imaging is a major challenge in geophysics with broad applications. It involves solving wave propagation equations with absorbing boundary conditions (ABC) multiple times. This drives the need for accurate and efficient numerical…

Numerical Analysis · Mathematics 2024-01-30 Fernando V. Ravelo , Martin Schreiber , Pedro S. Peixoto

We present a data-assisted iterative regularization method for solving ill-posed inverse problems. The proposed approach, termed \texttt{IRMGL+\(\Psi\)}, integrates classical iterative techniques with a data-driven regularization term…

Numerical Analysis · Mathematics 2025-10-28 Harshit Bajpai , Gaurav Mittal , Ankik Kumar Giri
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