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Intercellular exchange networks are essential for the adaptive capabilities of populations of cells. While diffusional exchanges have traditionally been difficult to map, recent advances in nanotechnology enable precise probing of exchange…

Statistical Mechanics · Physics 2024-12-13 Luís C. F. Latoski , Andrea De Martino , Daniele De Martino

A central goal of protein-folding theory is to predict the stochastic dynamics of transition paths --- the rare trajectories that transit between the folded and unfolded ensembles --- using only thermodynamic information, such as a…

Biomolecules · Quantitative Biology 2018-08-09 William M. Jacobs , Eugene I. Shakhnovich

Non-Hermitian systems distinguish themselves from Hermitian systems by exhibiting a phase transition point called an exceptional point (EP), which is the point at which two eigenstates coalesce under a system parameter variation. Many…

Mesoscale and Nanoscale Physics · Physics 2016-04-20 Kun Ding , Guancong Ma , Meng Xiao , Z. Q. Zhang , C. T. Chan

The existence of the {\em typical set} is key for data compression strategies and for the emergence of robust statistical observables in macroscopic physical systems. Standard approaches derive its existence from a restricted set of…

Statistical Mechanics · Physics 2022-02-10 Rudolf Hanel , Bernat Corominas-Murtra

In line with Pomeau's conjecture about the relevance of directed percolation (DP) to turbulence onset/decay in wall-bounded flows, we propose a minimal stochastic model dedicated to the interpretation of the spatially intermittent regimes…

Fluid Dynamics · Physics 2020-12-18 Paul Manneville , Masaki Shimizu

A key feature of the classical Fluctuation Dissipation theorem is its ability to approximate the average response of a dynamical system to a sufficiently small external perturbation from an appropriate time correlation function of the…

Mathematical Physics · Physics 2019-10-02 Rafail V. Abramov

We have studied the kinetics of cluster formation for dynamical systems of dimensions up to $n=8$ interacting through elastic collisions or coalescence. These systems could serve as possible models for gas kinetics, polymerization and…

Statistical Mechanics · Physics 2013-01-15 Carson McFadden , Louis-S. Bouchard

We present an application of the theory of stochastic processes to model and categorize non-equilibrium physical phenomena. The concepts of uniformly continuous probability measures and modular evolution lead to a systematic hierarchical…

Mathematical Physics · Physics 2009-08-18 Enrique Hernandez-Lemus , Jesus K. Estrada-Gil

We propose a statistical model defined on the three-dimensional diamond network where the splitting of randomly selected nodes leads to a spatially disordered network, with decreasing degree of connectivity. The terminal state, that is…

Disordered Systems and Neural Networks · Physics 2013-10-16 Susan Nachtrab , Matthias J. F. Hoffmann , Sebastian C. Kapfer , Gerd E. Schroeder-Turk , Klaus Mecke

We consider the modeling of the dynamics of the chemostat at its very source. The chemostat is classically represented as a system of ordinary differential equations. Our goal is to establish a stochastic model that is valid at the scale…

Quantitative Methods · Quantitative Biology 2011-07-07 Fabien Campillo , Marc Joannides , Irène Larramendy

We study the percolation properties of the growing clusters model. In this model, a number of seeds placed on random locations on a lattice are allowed to grow with a constant velocity to form clusters. When two or more clusters eventually…

Statistical Mechanics · Physics 2015-05-18 Nikolaos Tsakiris , Michail Maragakis , Kosmas Kosmidis , Panos Argyrakis

In this paper we consider a diffusion process obtained as a small random perturbation of a dynamical system attracted to a stable equilibrium point. The drift and the diffusive perturbation are assumed to evolve slowly in time. We describe…

Probability · Mathematics 2016-10-23 Mark Freidlin , Leonid Koralov

We study a two-dimensional kinetic Ising model with Swendsen-Wang dynamics, replacing the usual percolation on top of Ising clusters by explosive percolation. The model exhibits a reversible first-order phase transition with hysteresis.…

Statistical Mechanics · Physics 2012-07-02 Sebastian Angst , Silvio R. Dahmen , Haye Hinrichsen , Alfred Hucht , Martin P. Magiera

In this paper we analyze some aspects of {\em exponential flights}, a stochastic process that governs the evolution of many random transport phenomena, such as neutron propagation, chemical/biological species migration, or electron motion.…

Statistical Mechanics · Physics 2011-05-03 Andrea Zoia , Eric Dumonteil , Alain Mazzolo

Tumors initiate when a population of proliferating cells accumulates a certain number and type of genetic and/or epigenetic alterations. The population dynamics of such sequential acquisition of (epi)genetic alterations has been the topic…

Populations and Evolution · Quantitative Biology 2015-04-09 Peter Ashcroft , Franziska Michor , Tobias Galla

Diffusion models do not recover semantic structure uniformly over time. Instead, samples transition from semantic ambiguity to class commitment within a narrow regime. Recent theoretical work attributes this transition to dynamical…

Machine Learning · Statistics 2026-02-11 Florian Handke , Dejan Stančević , Felix Koulischer , Thomas Demeester , Luca Ambrogioni

Edges, binding together nodes within networks, have the potential to induce dramatic transitions when specific collective failure behaviors emerge. These changes, initially unfolding covertly and then erupting abruptly, pose substantial,…

Physics and Society · Physics 2023-10-11 Peng Peng , Tianlong Fan , Xiao-Long Ren , Linyuan Lü

The most intriguing properties of non-Hermitian systems are found near the exceptional points (EPs) at which the Hamiltonian matrix becomes defective. Due to the complex topological structure of the energy Riemann surfaces close to an EP…

Classical Physics · Physics 2018-06-19 Xu-Lin Zhang , Shubo Wang , Bo Hou , C. T. Chan

In this paper we introduce a contact process in an evolving random environment (CPERE) on a connected and transitive graph with bounded degree, where we assume that this environment is described through an ergodic spin systems with finite…

Probability · Mathematics 2023-09-18 Marco Seiler , Anja Sturm

The selection of an equilibrium state by maximising the entropy of a system, subject to certain constraints, is often powerfully motivated as an exercise in logical inference, a procedure where conclusions are reached on the basis of…

Statistical Mechanics · Physics 2015-12-03 Ian J. Ford