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In causal inference on directed acyclic graphs, the orientation of edges is in general only recovered up to Markov equivalence classes. We study Markov equivalence classes of uniformly random directed acyclic graphs. Using a tower…

Probability · Mathematics 2024-10-01 Dominik Schmid , Allan Sly

Randomising networks using a naive `accept-all' edge-swap algorithm is generally biased. Building on recent results for nondirected graphs, we construct an ergodic detailed balance Markov chain with non-trivial acceptance probabilities for…

Quantitative Methods · Quantitative Biology 2011-12-21 E. S. Roberts , A. C. C. Coolen

We study random graph models for directed acyclic graphs, an important class of networks that includes citation networks, food webs, and feed-forward neural networks among others. We propose two specific models, roughly analogous to the…

Physics and Society · Physics 2009-10-16 Brian Karrer , M. E. J. Newman

We consider the normalized Laplace operator for directed graphs with positive and negative edge weights. This generalization of the normalized Laplace operator for undirected graphs is used to characterize directed acyclic graphs. Moreover,…

Combinatorics · Mathematics 2012-02-01 Frank Bauer

Directed acyclic graphs (DAGs) are commonly used to model causal relationships among random variables. In general, learning the DAG structure is both computationally and statistically challenging. Moreover, without additional information,…

Machine Learning · Statistics 2024-03-26 Ali Shojaie , Wenyu Chen

For a graph with edge ordering, a linear order on the edge set, we obtain a permutation of vertices by considering the edges as transpositions of endvertices. It is known from D\'enes' results that the permutation of a tree is a full cyclic…

Combinatorics · Mathematics 2023-05-31 Ryo Uchiumi

An algorithm for generating the structure of a directed acyclic graph from data using the notion of causal input lists is presented. The algorithm manipulates the ordering of the variables with operations which very much resemble arc…

Artificial Intelligence · Computer Science 2013-03-25 Remco R. Bouckaert

Directed graphs occur throughout statistical modeling of networks, and exchangeability is a natural assumption when the ordering of vertices does not matter. There is a deep structural theory for exchangeable undirected graphs, which…

Statistics Theory · Mathematics 2016-12-19 Diana Cai , Nathanael Ackerman , Cameron Freer

We extend Andersson-Madigan-Perlman chain graphs by (i) relaxing the semidirected acyclity constraint so that only directed cycles are forbidden, and (ii) allowing up to two edges between any pair of nodes. We introduce global, and ordered…

Machine Learning · Statistics 2016-02-22 Jose M. Peña

The modular decomposition of a graph is a canonical representation of its modules. Algorithms for computing the modular decomposition of directed and undirected graphs differ significantly, with the undirected case being simpler, and…

Discrete Mathematics · Computer Science 2017-10-13 Henning Koehler

A polynomial-time exact algorithm for counting the number of directed acyclic graphs in a Markov equivalence class was recently given by Wien\"obst, Bannach, and Li\'skiewicz (AAAI 2021). In this paper, we consider the more general problem…

Data Structures and Algorithms · Computer Science 2023-06-14 Vidya Sagar Sharma

In this thesis we consider ordered graphs (that is, graphs with a fixed linear ordering on their vertices). We summarize and further investigations on the number of edges an ordered graph may have while avoiding a fixed forbidden ordered…

Discrete Mathematics · Computer Science 2009-07-16 Craig Weidert

Causal discovery, the learning of causality in a data mining scenario, has been of strong scientific and theoretical interest as a starting point to identify "what causes what?" Contingent on assumptions and a proper learning algorithm, it…

Methodology · Statistics 2022-05-23 Gabriel Ruiz , Oscar Hernan Madrid Padilla , Qing Zhou

Random directed acyclic graphs (DAGs) based on imposing an order on Erd\H{o}s-R\'enyi and scale free random graphs are widely used for evaluating causal discovery algorithms. We show that in such DAGs, the set of nodes reachable via open…

Methodology · Statistics 2026-05-08 Alexander G. Reisach , Antoine Chambaz , Gilles Blanchard , Sebastian Weichwald

A cyclic base ordering of a connected graph $G$, is a cyclic ordering of $E(G)$ such that every cyclically consecutive $|V(G)|-1$ edges form a spanning tree. In this project, we study cyclic base ordering of various families of graphs,…

Combinatorics · Mathematics 2021-10-05 Jessica Li , Eric Yang , William Zhang

A weighted graph is a graph in which every edge is assigned a non-negative real number. In a weighted graph, the weight of a path is the sum of the weights of its edges, and the weighed degree of a vertex is the sum of the weights of the…

Combinatorics · Mathematics 2011-11-28 Binlong Li , Shenggui Zhang

We propose a novel method for topological analysis of unweighted graphs which is based on \textit{persistent homology}. The proposed method maps the input graph to a complete weighted graph where the weighting function maps each edge to a…

Algebraic Topology · Mathematics 2020-07-31 Padraig Corcoran

An edge-ordered graph is a graph with a total ordering of its edges. A path $P=v_1v_2\ldots v_k$ in an edge-ordered graph is called increasing if $(v_iv_{i+1}) > (v_{i+1}v_{i+2})$ for all $i = 1,\ldots,k-2$; it is called decreasing if…

Combinatorics · Mathematics 2020-01-22 Frank Duque , Ruy Fabila-Monroy , Carlos Hidalgo-Toscano , Pablo Pérez-Lantero

\textsc{Directed Token Sliding} asks, given a directed graph and two sets of pairwise nonadjacent vertices, whether one can reach from one set to the other by repeatedly applying a local operation that exchanges a vertex in the current set…

Data Structures and Algorithms · Computer Science 2022-03-28 Takehiro Ito , Yuni Iwamasa , Yasuaki Kobayashi , Yu Nakahata , Yota Otachi , Masahiro Takahashi , Kunihiro Wasa

An edge-weighting of a graph is called vertex-coloring if the weighted degrees yield a proper vertex coloring of the graph. It is conjectured that for every graph without isolated edge, a vertex-coloring edge-weighting with the set {1,2,3}…

Combinatorics · Mathematics 2023-05-04 Ralph Keusch