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We introduce and test a general machine-learning-based technique for the inference of short term causal dependence between state variables of an unknown dynamical system from time series measurements of its state variables. Our technique…

Adaptation and Self-Organizing Systems · Physics 2020-12-18 Amitava Banerjee , Jaideep Pathak , Rajarshi Roy , Juan G. Restrepo , Edward Ott

The basic inverse problem in spectral graph theory consists in determining the graph given its eigenvalue spectrum. In this paper, we are interested in a network of technological agents whose graph is unknown, communicating by means of a…

Mathematical Physics · Physics 2013-08-20 Enzo Fioriti , Stefano Chiesa , Fabio Fratichini

Network reconstruction is the first step towards understanding, diagnosing and controlling the dynamics of complex networked systems. It allows us to infer properties of the interaction matrix, which characterizes how nodes in a system…

Systems and Control · Computer Science 2016-01-12 Marco Tulio Angulo , Jaime A. Moreno , Albert-László Barabási , Yang-Yu Liu

The dynamics of systems of interacting agents is determined by the structure of their coupling network. The knowledge of the latter is, therefore, highly desirable, for instance, to develop efficient control schemes, to accurately predict…

Adaptation and Self-Organizing Systems · Physics 2021-10-13 Melvyn Tyloo , Robin Delabays , Philippe Jacquod

In both natural and engineered systems, communication often occurs dynamically over networks ranging from highly structured grids to largely disordered graphs. To use, or comprehend the use of, networks as efficient communication media…

Physics and Society · Physics 2020-03-17 Giacomo Baggio , Virginia Rutten , Guillaume Hennequin , Sandro Zampieri

The problem of achieving consensus in a network of connected systems arises in many science and engineering applications. In contrast to previous works, we focus on the system reactivity, i.e., the initial amplification of the norm of the…

Systems and Control · Electrical Eng. & Systems 2023-06-21 Amirhossein Nazerian , David Phillips , Hernan A. Makse , Francesco Sorrentino

The paper considers the problem of performing a task defined on a model parameter that is only observed indirectly through noisy data in an ill-posed inverse problem. A key aspect is to formalize the steps of reconstruction and task as…

Computer Vision and Pattern Recognition · Computer Science 2022-10-11 Jonas Adler , Sebastian Lunz , Olivier Verdier , Carola-Bibiane Schönlieb , Ozan Öktem

The network inference problem consists of reconstructing the edge set of a network given traces representing the chronology of infection times as epidemics spread through the network. This problem is a paradigmatic representative of…

Data Structures and Algorithms · Computer Science 2013-08-14 Bruno Abrahao , Flavio Chierichetti , Robert Kleinberg , Alessandro Panconesi

We present a method for the reconstruction of networks, based on the order of nodes visited by a stochastic branching process. Our algorithm reconstructs a network of minimal size that ensures consistency with the data. Crucially, we show…

Data Structures and Algorithms · Computer Science 2010-06-07 Nick Fyson , Tijl De Bie , Nello Cristianini

There exist many problem domains where the interpretability of neural network models is essential for deployment. Here we introduce a recurrent architecture composed of input-switched affine transformations - in other words an RNN without…

Artificial Intelligence · Computer Science 2017-06-14 Jakob N. Foerster , Justin Gilmer , Jan Chorowski , Jascha Sohl-Dickstein , David Sussillo

In this paper, we propose a novelty-based metric for quantitative characterization of the controllability of complex networks. This inherently bounded metric describes the average angular separation of an input with respect to the past…

Optimization and Control · Mathematics 2014-09-30 Gautam Kumar , Delsin Menolascino , MohammadMehdi Kafashan , ShiNung Ching

In real-world and online social networks, individuals receive and transmit information in real time. Cascading information transmissions (e.g. phone calls, text messages, social media posts) may be understood as a realization of a diffusion…

Machine Learning · Computer Science 2017-07-11 Lin Chen , Forrest W Crawford , Amin Karbasi

Resonator networks are ubiquitous in natural and engineered systems, such as solid-state materials, neural tissue, and electrical circuits. To understand and manipulate these networks, it is essential to characterize their building blocks,…

Data Analysis, Statistics and Probability · Physics 2023-06-05 Viva R. Horowitz , Brittany Carter , Uriel Hernandez , Trevor Scheuing , Benjamín J. Alemán

This paper aims at the study of controllability properties and induced controllability metrics on complex networks governed by a class of (discrete time) linear decision processes with mul-tiplicative noise. The dynamics are given by a…

Optimization and Control · Mathematics 2016-12-15 Tidiane Diallo , Dan Goreac

Nowadays massive amount of data are available for analysis in natural and social systems. Inferring system structures from the data, i.e., the inverse problem, has become one of the central issues in many disciplines and interdisciplinary…

Biological Physics · Physics 2015-06-22 Zhaoyang Zhang , Zhigang Zheng , Haijing Niu , Yuanyuan Mi , Si Wu , Gang Hu

Networks are widely used in many fields for their powerful ability to provide vivid representations of relationships between variables. However, many of them may be corrupted by experimental noise or inappropriate network inference methods…

Molecular Networks · Quantitative Biology 2021-09-21 Jiating Yu , Jiacheng Leng , Ling-Yun Wu

This work studies approximation based on single-hidden-layer feedforward and recurrent neural networks with randomly generated internal weights. These methods, in which only the last layer of weights and a few hyperparameters are optimized,…

Probability · Mathematics 2021-02-17 Lukas Gonon , Lyudmila Grigoryeva , Juan-Pablo Ortega

Data-based inference of directed interactions in complex dynamical systems is a problem common to many disciplines of science. In this work, we study networks of spatially separate dynamical entities, which could represent physical systems…

Statistical Mechanics · Physics 2024-03-15 Tim Hempel , Sarah A. M. Loos

Consider observing an undirected network that is `noisy' in the sense that there are Type I and Type II errors in the observation of edges. Such errors can arise, for example, in the context of inferring gene regulatory networks in genomics…

Machine Learning · Statistics 2014-01-03 Prakash Balachandran , Edoardo Airoldi , Eric Kolaczyk

Reconstructing an image from noisy and incomplete measurements is a central task in several image processing applications. In recent years, state-of-the-art reconstruction methods have been developed based on recent advances in deep…

Computer Vision and Pattern Recognition · Computer Science 2023-04-17 Christoph Angermann , Simon Göppel , Markus Haltmeier