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Embedding graphs in continous spaces is a key factor in designing and developing algorithms for automatic information extraction to be applied in diverse tasks (e.g., learning, inferring, predicting). The reliability of graph embeddings…

Machine Learning · Computer Science 2023-11-30 Andrea Marinoni , Pietro Lio' , Alessandro Barp , Christian Jutten , Mark Girolami

We introduce COPT, a novel distance metric between graphs defined via an optimization routine, computing a coordinated pair of optimal transport maps simultaneously. This gives an unsupervised way to learn general-purpose graph…

Machine Learning · Computer Science 2021-01-01 Yihe Dong , Will Sawin

Quantifying the topological similarities of different parts of urban road networks (URNs) enables us to understand the urban growth patterns. While conventional statistics provide useful information about characteristics of either a single…

Physics and Society · Physics 2021-12-01 Jiawei Xue , Nan Jiang , Senwei Liang , Qiyuan Pang , Takahiro Yabe , Satish V. Ukkusuri , Jianzhu Ma

Graph embedding is a transformation of nodes of a network into a set of vectors. A good embedding should capture the underlying graph topology and structure, node-to-node relationship, and other relevant information about the graph, its…

Social and Information Networks · Computer Science 2021-12-02 Bogumił Kamiński , Łukasz Kraiński , Paweł Prałat , François Théberge

Graph Edit Distance (GED) is a popular similarity measurement for pairwise graphs and it also refers to the recovery of the edit path from the source graph to the target graph. Traditional A* algorithm suffers scalability issues due to its…

Machine Learning · Computer Science 2020-12-03 Runzhong Wang , Tianqi Zhang , Tianshu Yu , Junchi Yan , Xiaokang Yang

We present a novel framework based on optimal transport for the challenging problem of comparing graphs. Specifically, we exploit the probabilistic distribution of smooth graph signals defined with respect to the graph topology. This allows…

Machine Learning · Computer Science 2019-12-09 Hermina Petric Maretic , Mireille EL Gheche , Giovanni Chierchia , Pascal Frossard

Learning faithful graph representations as sets of vertex embeddings has become a fundamental intermediary step in a wide range of machine learning applications. The quality of the embeddings is usually determined by how well the geometry…

Machine Learning · Computer Science 2021-05-13 Federico López , Beatrice Pozzetti , Steve Trettel , Anna Wienhard

In many real-world contexts, such as social or transport networks, data exhibit both structural connectivity and node-level attributes. For example, roads in a transport network can be characterized not only by their connectivity but also…

Methodology · Statistics 2025-12-18 Ioana Gavra , Ketsia Guichard-Sustowski , Loïc Le Marrec

Causal discovery aims to recover graphs that represent causal relations among given variables from observations, and new methods are constantly being proposed. Increasingly, the community raises questions about how much progress is made,…

Machine Learning · Computer Science 2025-10-30 Zhufeng Li , Niki Kilbertus

The unit distance embeddability of a graph, like planarity, involves a mix of constraints that are combinatorial and geometric. We construct a unit distance embedding for $H-e$ in the hope that it will lead to an embedding for $H$. We then…

Combinatorics · Mathematics 2007-11-08 Mitchell A. Harris

Similarity measures are used extensively in machine learning and data science algorithms. The newly proposed graph Relative Hausdorff (RH) distance is a lightweight yet nuanced similarity measure for quantifying the closeness of two graphs.…

Discrete Mathematics · Computer Science 2019-06-13 Sinan G. Aksoy , Kathleen E. Nowak , Emilie Purvine , Stephen J. Young

Random geometric graphs are random graph models defined on metric spaces. Such a model is defined by first sampling points from a metric space and then connecting each pair of sampled points with probability that depends on their distance,…

Machine Learning · Computer Science 2026-04-10 Han Huang , Pakawut Jiradilok , Elchanan Mossel

Urban transportation networks are inherently vulnerable to disruptions that affect connectivity and passenger mobility. Traditional graph_theoretic metrics, such as betweenness and degree centrality, offer insights into local network…

Physics and Society · Physics 2025-10-29 Iman Seyedi , Antonio Candelieri , Enza Messina , Francesco Archetti

Exploiting geometric structure to improve the asymptotic complexity of discrete assignment problems is a well-studied subject. In contrast, the practical advantages of using geometry for such problems have not been explored. We implement…

Computational Geometry · Computer Science 2016-06-13 Michael Kerber , Dmitriy Morozov , Arnur Nigmetov

A network can be analyzed at different topological scales, ranging from single nodes to motifs, communities, up to the complete structure. We propose a novel intermediate-level topological analysis that considers non-overlapping subgraphs…

Computational Physics · Physics 2009-11-13 Lucas Antiqueira , Luciano da Fontoura Costa

In modern relational machine learning it is common to encounter large graphs that arise via interactions or similarities between observations in many domains. Further, in many cases the target entities for analysis are actually signals on…

New geometric and computational analyses of power-weighted shortest-path distances (PWSPDs) are presented. By illuminating the way these metrics balance density and geometry in the underlying data, we clarify their key parameters and…

Machine Learning · Statistics 2021-06-09 Anna Little , Daniel McKenzie , James Murphy

Understanding and adequately assessing the difference between a true and a learnt causal graphs is crucial for causal inference under interventions. As an extension to the graph-based structural Hamming distance and structural intervention…

Machine Learning · Statistics 2023-08-01 Mihir Dhanakshirur , Felix Laumann , Junhyung Park , Mauricio Barahona

For graph classification tasks, many traditional kernel methods focus on measuring the similarity between graphs. These methods have achieved great success on resolving graph isomorphism problems. However, in some classification problems,…

Machine Learning · Computer Science 2021-02-18 Jianming Huang , Hiroyuki Kasai

Graph embedding based on random-walks supports effective solutions for many graph-related downstream tasks. However, the abundance of embedding literature has made it increasingly difficult to compare existing methods and to identify…

Machine Learning · Computer Science 2021-10-26 Zexi Huang , Arlei Silva , Ambuj Singh
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