Related papers: XML Compression via DAGs
Rooted phylogenetic networks, or more generally, directed acyclic graphs (DAGs), are widely used to model species or gene relationships that traditional rooted trees cannot fully capture, especially in the presence of reticulate processes…
Tree balance plays an important role in different research areas like theoretical computer science and mathematical phylogenetics. For example, it has long been known that under the Yule model, a pure birth process, imbalanced trees are…
We present a new compact representation to efficiently store and query large RDF datasets in main memory. Our proposal, called BMatrix, is based on the k2-tree, a data structure devised to represent binary matrices in a compressed way, and…
A spanning tree of a network or graph is a subgraph that connects all nodes with the least number or weight of edges. The spanning tree is one of the most straightforward techniques for network simplification and sampling, and for…
A graph in which all minimal zero forcing sets are in fact minimum size is called ``well-forced." This paper characterizes well-forced trees and presents an algorithm for determining which trees are well-forced. Additionally, we…
In this paper, we present a novel data structure, called the Mixture Graph. This data structure allows us to compress, render, and query segmentation histograms. Such histograms arise when building a mipmap of a volume containing…
We introduce and investigate the approximability of the maximum binary tree problem (MBT) in directed and undirected graphs. The goal in MBT is to find a maximum-sized binary tree in a given graph. MBT is a natural variant of the…
Binary rooted trees, both in the ordered and in the un-ordered case, are well studied structures in the field of combinatorics. The aim of this work is to study particular patterns in these classes of trees. We consider completely…
Directed acyclic graphical models (DAGs) are often used to describe common structural properties in a family of probability distributions. This paper addresses the question of classifying DAGs up to an isomorphism. By considering Gaussian…
We consider extremal problems related to decks and multidecks of rooted binary trees (a.k.a. rooted phylogenetic tree shapes). Here, the deck (resp. multideck) of a tree $T$ refers to the set (resp. multiset) of leaf induced binary subtrees…
We generalise the insertion into a binary heap to any directed acyclic graph (DAG) with one source vertex. This lets us formulate a general method for converting any such DAG into a data structure with priority queue interface. We apply our…
A labeling scheme for nearest common ancestors assigns a distinct binary string, called the label, to every node of a tree, so that given the labels of two nodes (and no further information about the topology of the tree) we can compute the…
The eXtensible Markup Language (XML) provides a powerful and flexible means of encoding and exchanging data. As it turns out, its main advantage as an encoding format (namely, its requirement that all open and close markup tags are present…
An encoding of directed acyclic graphs (DAGs) on labeled vertices is proposed, which is a generalisation of the Pr\"ufer code for labeled trees, if a certain orienation on the edges of the tree is introduced. Hence it is shown that the…
Image compression has been a frequent topic of presentations at ADASS. Compression is often viewed as just a technique to fit more data into a smaller space. Rather, the packing of data - its "density" - affects every facet of local data…
By processing all minimal cutsets of a graph G, and by using novel wildcards, all spanning trees of G can be compactly encoded. Surprisingly, a 1986 algorithm of Winter seems to achieve (Conjecture 2) exactly the same compression, although…
Learning graphical conditional independence structures is an important machine learning problem and a cornerstone of causal discovery. However, the accuracy and execution time of learning algorithms generally struggle to scale to problems…
The maximum common subtree isomorphism problem asks for the largest possible isomorphism between subtrees of two given input trees. This problem is a natural restriction of the maximum common subgraph problem, which is ${\sf NP}$-hard in…
The tree based representation described in this paper, hereditarily binary numbers, applies recursively a run-length compression mechanism that enables computations limited by the structural complexity of their operands rather than by their…
Phylogenetic networks are a generalization of evolutionary or phylogenetic trees that are commonly used to represent the evolution of species which cross with one another. A special type of phylogenetic network is an {\em $X$-cactus}, which…