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This dissertation explores applications of discrete geometry in mathematical neuroscience. We begin with convex neural codes, which model the activity of hippocampal place cells and other neurons with convex receptive fields. In Chapter 4,…

Neurons and Cognition · Quantitative Biology 2022-09-19 Caitlin Lienkaemper

For a graph G embedded in an orientable surface \Sigma, we consider associated links L(G) in the thickened surface \Sigma \times I. We relate the HOMFLY polynomial of L(G) to the recently defined Bollobas-Riordan polynomial of a ribbon…

Combinatorics · Mathematics 2012-03-01 Iain Moffatt

We consider the notion of mosaic diagrams for surface-links using marked graph diagrams. We establish bounds, in some cases tight, on the mosaic numbers for the surface-links with ch-index up to 10. As an application, we use mosaic diagrams…

Geometric Topology · Mathematics 2023-01-03 Seonmi Choi , Sam Nelson

The classical Thistlethwaite theorem for links can be phrased as asserting that the Kauffman bracket of a link can be obtained from an evaluation of the Bollob\'as-Riordan polynomial of a ribbon graph associated to one of the link's…

Geometric Topology · Mathematics 2024-12-18 Sergei Chmutov , Qingying Deng , Joanna A. Ellis-Monaghan , Sergei Lando , Wout Moltmaker

We employ a solution of the Yang-Baxter equation to construct invariants for knot-like objects. Specifically, we consider a Yang-Baxter state model for the sl(n) polynomial of classical links and extend it to oriented singular links and…

Geometric Topology · Mathematics 2021-12-16 Carmen Caprau , Tsutomu Okano , Danny Orton

We give the explicit algorithm computing the motivic generalization of the Poincare series of the plane curve singularity introduced by A. Campillo, F. Delgado and S. Gusein-Zade. It is done in terms of the embedded resolution of the curve.…

Algebraic Geometry · Mathematics 2011-04-20 E. Gorsky

This paper is a survey of knot theory and invariants of knots and links from the point of view of categories of diagrams. The topics range from foundations of knot theory to virtual knot theory and topological quantum field theory.

General Topology · Mathematics 2007-05-23 Louis H. Kauffman

Multiparticle correlators are mathematical objects frequently encountered in quantum field theory and collider physics. By translating multiparticle correlators into the language of graph theory, we can gain new insights into their…

High Energy Physics - Phenomenology · Physics 2020-03-04 Patrick T. Komiske , Eric M. Metodiev , Jesse Thaler

We introduce the non-self OU sequence and the OU number for link diagrams. Using these, we give a lower bound for the number of necessary Reidemeister moves of type III between two diagrams of the same link.

Geometric Topology · Mathematics 2026-02-19 Naoki Sakata , Ayaka Shimizu , Koya Shimokawa

We study the combinatorial representation theory of the ``planar rook algebra" $P_n$. This algebra has a basis consisting of planar rook diagrams and multiplication given by diagram concatenation. For each integer $0 \le k \le n$, we…

Representation Theory · Mathematics 2008-06-25 Daniel Flath , Tom Halverson , Kathryn Herbig

Linking diagrams with path composition are ubiquitous, for example: Temperley-Lieb and Brauer monoids, Kelly-Laplaza graphs for compact closed categories, and Girard's multiplicative proof nets. We construct the category Link=Span(iRel),…

Category Theory · Mathematics 2008-05-13 Dominic J. D. Hughes

A framework of monomial codes is considered, which includes linear codes generated by the evaluation of certain monomials. Polar and Reed-Muller codes are the two best-known representatives of such codes and can be considered as two extreme…

Information Theory · Computer Science 2021-02-08 Kirill Ivanov , Rüdiger Urbanke

Inspired by the recent advances in deep learning (DL), this work presents a deep neural network aided decoding algorithm for binary linear codes. Based on the concept of deep unfolding, we design a decoding network by unfolding the…

Information Theory · Computer Science 2020-02-19 Yi Wei , Ming-Min Zhao , Min-Jian Zhao , Ming Lei

This paper is a survey on the theory of knotoids and braidoids. Knotoids are open ended knot diagrams in surfaces and braidoids are geometric objects analogous to classical braids, forming a counterpart theory to the theory of knotoids in…

Geometric Topology · Mathematics 2019-03-06 Neslihan Gügümcü , Louis H. Kauffman , Sofia Lambropoulou

We investigate link homology theories for stable equivalence classes of link diagrams on orientable surfaces. We apply (1+1)-dimensional unoriented topological quantum field theories to Bar-Natan's geometric formalism to define new theories…

Geometric Topology · Mathematics 2009-04-17 Vladimir Turaev , Paul Turner

Using a notation of corner between edges when graph has a fixed rotation, i.e. cyclical order of edges around vertices, we define combinatorial objects - combinatorial maps as pairs of permutations, one for vertices and one for faces.…

Combinatorics · Mathematics 2009-09-02 Dainis Zeps

We give new proofs of asymptotic upper bounds of coding theory obtained within the frame of Delsarte's linear programming method. The proofs rely on the analysis of eigenvectors of some finite-dimensional operators related to orthogonal…

Information Theory · Computer Science 2019-05-14 Alexander Barg , Dmitry Nogin

Error-correcting codes and related combinatorial constructs play an important role in several recent (and old) results in computational complexity theory. In this paper we survey results on locally-testable and locally-decodable…

Computational Complexity · Computer Science 2007-07-13 Luca Trevisan

A correspondence is studied by H. Matsuda between front projections of Legendrian links in the standard contact structure for 3-space and rectangular diagrams. In this paper, we introduce braided rectangular diagrams, and study a…

Geometric Topology · Mathematics 2007-08-20 Hiroshi Matsuda , William W. Menasco

Sum-rank codes are an important class of codes which can be utilized for linear network coding, space-time coding and distributed storage. They can not only reduce the size of network alphabet but also detect and correct more errors. Based…

Information Theory · Computer Science 2025-10-14 Qingfeng Xia , Hongwei Liu , Hao Chen , Xu Pan