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Sequence Alignment is the process of aligning biological sequences in order to identify similarities between multiple sequences. In this paper, a Quantum Algorithm for finding the optimal alignment between DNA sequences has been…

Data Structures and Algorithms · Computer Science 2025-09-05 Md. Rabiul Islam Khan , Shadman Shahriar , Shaikh Farhan Rafid

It has been widely recognized that the performance of a multi-agent system is highly affected by its organization. A large scale system may have billions of possible ways of organization, which makes it impractical to find an optimal choice…

Multiagent Systems · Computer Science 2014-11-25 Zhiqi Shen , Ling Yu , Han Yu

We present a multi-purpose genetic algorithm, designed and implemented with GPGPU / CUDA parallel computing technology. The model was derived from a multi-core CPU serial implementation, named GAME, already scientifically successfully…

Instrumentation and Methods for Astrophysics · Physics 2015-01-30 Stefano Cavuoti , Mauro Garofalo , Massimo Brescia , Antonio Pescapé , Giuseppe Longo , Giorgio Ventre

In this paper we analyze the cryptanalysis of the simplified data encryption standard algorithm using meta-heuristics and in particular genetic algorithms. The classic fitness function when using such an algorithm is to compare n-gram…

Cryptography and Security · Computer Science 2014-07-09 Fabien Teytaud , Cyril Fonlupt

This paper discusses various types of constraints, difficulties and solutions to overcome the challenges regarding university course allocation problem. A hybrid evolutionary algorithm has been defined combining Local Repair Algorithm and…

Neural and Evolutionary Computing · Computer Science 2023-07-25 Dibyo Fabian Dofadar , Riyo Hayat Khan , Shafqat Hasan , Towshik Anam Taj , Arif Shakil , Mahbub Majumdar

Gradual argumentation frameworks represent arguments and their relationships in a weighted graph. Their graphical structure and intuitive semantics makes them a potentially interesting tool for interpretable machine learning. It has been…

Machine Learning · Computer Science 2021-06-28 Jonathan Spieler , Nico Potyka , Steffen Staab

Learning ensembles by bagging can substantially improve the generalization performance of low-bias, high-variance estimators, including those evolved by Genetic Programming (GP). To be efficient, modern GP algorithms for evolving (bagging)…

Neural and Evolutionary Computing · Computer Science 2021-02-08 Marco Virgolin

The automatic generation of computer programs is one of the main applications with practical relevance in the field of evolutionary computation. With program synthesis techniques not only software developers could be supported in their…

Neural and Evolutionary Computing · Computer Science 2021-08-30 Dominik Sobania , Dirk Schweim , Franz Rothlauf

Nuclear Magnetic Resonance (NMR) Spectroscopy is a widely used technique to predict the native structure of proteins. However, NMR machines are only able to report approximate and partial distances between pair of atoms. To build the…

Neural and Evolutionary Computing · Computer Science 2014-11-18 Md. Lisul Islam , Swakkhar Shatabda , M. Sohel Rahman

Genetic information is encoded in a linear sequence of nucleotides, represented by letters ranging from thousands to billions. Mutations refer to changes in the DNA or RNA nucleotide sequence. Thus, mutation detection is vital in all areas…

The influence of time-dependent fitnesses on the infinite population dynamics of simple genetic algorithms (without crossover) is analyzed. Based on general arguments, a schematic phase diagram is constructed that allows one to characterize…

Biological Physics · Physics 2007-05-23 Christopher Ronnewinkel , Claus O. Wilke , Thomas Martinetz

This effort examines the intersection of the emerging field of quantum computing and the more established field of evolutionary computation. The goal is to understand what benefits quantum computing might offer to computational intelligence…

Neural and Evolutionary Computing · Computer Science 2008-12-18 Donald A. Sofge

We discuss how to use a Genetic Regulatory Network as an evolutionary representation to solve a typical GP reinforcement problem, the pole balancing. The network is a modified version of an Artificial Regulatory Network proposed a few years…

Artificial Intelligence · Computer Science 2010-05-20 Miguel Nicolau , Marc Schoenauer , W. Banzhaf

In the present work, genetic algorithm method (GA) is applied to the problem of impurity at the center of a spherical quantum dot for infinite confining potential case. For this purpose, any trial variational wave function is considered for…

Mesoscale and Nanoscale Physics · Physics 2009-09-29 Haluk Safak , Mehmet Sahin , Berna Gulveren , Mehmet Tomak

We study the algorithmic complexity of fair division problems with a focus on minimizing the number of queries needed to find an approximate solution with desired accuracy. We show for several classes of fair division problems that under…

Combinatorics · Mathematics 2023-11-16 Alexandr Grebennikov , Xenia Isaeva , Andrei V. Malyutin , Mikhail Mikhailov , Oleg R. Musin

This chapter presents an introduction to graph colouring algorithms. The focus is on vertex-colouring algorithms that work for general classes of graphs with worst-case performance guarantees in a sequential model of computation. The…

Data Structures and Algorithms · Computer Science 2015-05-22 Thore Husfeldt

In this paper, a genetic algorithm, one of the evolutionary algorithms optimization methods, is used for the first time for the problem of finding extremal binary self-dual codes. We present a comparison of the computational times between a…

Neural and Evolutionary Computing · Computer Science 2020-12-23 Adrian Korban , Serap Sahinkaya , Deniz Ustun

The Genetic Algorithm is a heuristic that can be used to produce model independent solutions to an optimization problem, thus making it ideal for use in cosmology and more specifically in the analysis of type Ia supernovae data. In this…

Cosmology and Nongalactic Astrophysics · Physics 2011-03-18 Savvas Nesseris

In this paper we introduce a novel method for automatically tuning the search parameters of a chess program using genetic algorithms. Our results show that a large set of parameter values can be learned automatically, such that the…

Artificial Intelligence · Computer Science 2010-09-06 Omid David-Tabibi , Moshe Koppel , Nathan S. Netanyahu

Multiprocessor task scheduling is an important and computationally difficult problem. This paper proposes a comparison study of genetic algorithm and list scheduling algorithm. Both algorithms are naturally parallelizable but have heavy…

Performance · Computer Science 2010-02-08 S. R. Vijayalakshmi , G. Padmavathi
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