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Related papers: Energy barriers govern glassy dynamics in tissues

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Cell motion inside dense tissues governs many biological processes, including embryonic development and cancer metastasis, and recent experiments suggest that these tissues exhibit collective glassy behavior. To make quantitative…

Biological Physics · Physics 2016-04-27 Dapeng Bi , Xingbo Yang , M. Cristina Marchetti , M. Lisa Manning

Dynamical heterogeneities have been introduced in the context of the glass transition of molecular liquids and the lengthscale associated with them has been argued to be at the origin of the observed quasi-universal behaviour of glassy…

Soft Condensed Matter · Physics 2015-03-17 Olivier Dauchot , Douglas J. Durian , Martin van Hecke

Directed cell motion in response to an external chemical gradient occurs in many biological phenomena such as wound healing, angiogenesis, and cancer metastasis. Chemotaxis is often characterized by the accuracy, persistence, and speed of…

Cell Behavior · Quantitative Biology 2019-06-19 Julien Varennes , Hye-ran Moon , Soutick Saha , Andrew Mugler , Bumsoo Han

Collective cell migration is a multicellular phenomenon that arises in various biological contexts, including cancer and embryo development. "Collectiveness" can be promoted by cell-cell interactions such as co-attraction and contact…

Cell Behavior · Quantitative Biology 2023-10-03 Viktoria Freingruber , Kevin J. Painter , Mariya Ptashnyk , Linus Schumacher

Biological cells exhibit a hierarchical spatial organization, where various compartments harbor condensates that form by phase separation. Cells can control the emergence of these condensates by affecting compartment size, the amount of the…

Biological Physics · Physics 2025-04-03 Riccardo Rossetto , Gerrit Wellecke , David Zwicker

The effect of different possible kinds of motion of the exciting walls (cyclic, random, ...) is investigated on the dynamics of a granular dissipative gas. It is shown that the real distribution of speed of the wall which interact with the…

Fluid Dynamics · Physics 2011-12-19 P. Evesque

We use computer simulations to study the relaxation dynamics of a model for oil-in-water microemulsion droplets linked with telechelic polymers. This system exhibits both gel and glass phases and we show that the competition between these…

Soft Condensed Matter · Physics 2015-05-29 Pinaki Chaudhuri , Pablo I. Hurtado , Ludovic Berthier , Walter Kob

Epithelial cell monolayers expand on substrates by forming finger-like protrusions, created by leader cells, in the monolayer boundary. Information transmission and communication between individual entities in the cohesive collective lead…

Biological Physics · Physics 2021-09-06 Sameeksha Rao , Suvakash Dey , Namrata Gundiah

Glasses possess complex energy landscapes and exhibit non-equilibrium aging dynamics. Here, we propose a generalized trap model for activated aging based on a key static property of the energy landscape: the distribution of energy barriers.…

Disordered Systems and Neural Networks · Physics 2026-01-22 Bin Li , Deng Pan , Ting Qu , Yuliang Jin

Glassy dynamics is intermittent, as particles suddenly jump out of the cage formed by their neighbours, and heterogeneous, as these jumps are not uniformly distributed across the system. Relating these features of the dynamics to the…

Soft Condensed Matter · Physics 2017-05-16 Raffaele Pastore , Giuseppe Pesce , Antonio Sasso , Massimo Pica Ciamarra

The effect of disorder in the energetic heights and in the physical locations of fence barriers encountered by transmembrane molecules such as proteins and lipids in their motion in cell membranes is studied theoretically. The investigation…

Biological Physics · Physics 2009-11-13 Z. Kalay , P. E. Parris , V. M. Kenkre

The complexity of glasses makes it challenging to explain their dynamics. Machine Learning (ML) has emerged as a promising pathway for understanding glassy dynamics by linking their structural features to rearrangement dynamics. Support…

Soft Condensed Matter · Physics 2025-02-11 Arabind Swain , Sean Alexander Ridout , Ilya Nemenman

Trap models describe glassy dynamics as a stochastic process on a network of configurations representing local energy minima. We study within this class the paradigmatic Barrat-M\'ezard model, which has Glauber transition rates. Our focus…

Disordered Systems and Neural Networks · Physics 2020-09-25 Diego Tapias , Eva Paprotzki , Peter Sollich

We use a free energy functional theory to elucidate general properties of heterogeneously ordering, fast folding proteins, and we test our conclusions with lattice simulations. We find that both structural and energetic heterogeneity can…

Disordered Systems and Neural Networks · Physics 2009-10-31 Steven S. Plotkin , Jose N. Onuchic

In molecular liquids such as water, time-delayed influences between microscopic or mesoscopic variables are typically probed using time-correlation functions, which are symmetric under detailed balance and therefore blind to dynamical…

Chemical Physics · Physics 2026-04-22 Leon Huet , Vittorio Del Tatto , Debarshi Banerjee , Alessandro Laio , Ali A. Hassanali

Developing tissues often maintain mechanical coherence while continuously remodeling through cellular processes such as cell divisions and rearrangements. In this way, they are an example of amorphous solids. In passive amorphous solids,…

Soft Condensed Matter · Physics 2026-05-13 Ali Tahaei , Ahandeep Manna , Marko Popović

Dynamics is central to living systems. In the last two decades, experiments have revealed that the dynamics in diverse biological systems - from intracellular cytoplasm to cellular and organismal aggregates - are remarkably similar to that…

Soft Condensed Matter · Physics 2024-03-12 Souvik Sadhukhan , Subhodeep Dey , Smarajit Karmakar , Saroj Kumar Nandi

Multicellular tissues are the building blocks of many biological systems and organs. These tissues are not static, but dynamically change over time. Even if the overall structure remains the same there is a turnover of cells within the…

Tissues and Organs · Quantitative Biology 2021-02-12 Domenic P. J. Germano , James M. Osborne

Many diffusion processes in nature and society were found to be anomalous, in the sense of being fundamentally different from conventional Brownian motion. An important example is the migration of biological cells, which exhibits…

Statistical Mechanics · Physics 2018-02-13 J. M. Nava-Sedeno , H. Hatzikirou , R. Klages , A. Deutsch

Dynamic facilitation theory assumes short-ranged dynamic constraints to be the essential feature of supercooled liquids and draws much of its conclusions from the study of kinetically constrained models. While deceptively simple, these…

Materials Science · Physics 2012-06-12 Thomas Speck , David Chandler
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