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We discuss species distribution models (SDM) for biodiversity studies in ecology. SDM plays an important role to estimate abundance of a species based on environmental variables that are closely related with the habitat of the species. The…

Applications · Statistics 2023-05-01 Osamu Komori , Yusuke Saigusa , Shinto Eguchi

Species distribution modeling (SDM) plays a crucial role in investigating habitat suitability and addressing various ecological issues. While likelihood analysis is commonly used to draw ecological conclusions, it has been observed that its…

Methodology · Statistics 2023-07-03 Yusuke Saigusa , Shinto Eguchi , Osamu Komori

Presence-only data, point locations where a species has been recorded as being present, are often used in modeling the distribution of a species as a function of a set of explanatory variables---whether to map species occurrence, to…

Applications · Statistics 2010-11-16 David I. Warton , Leah C. Shepherd

Site occupancy models are routinely used to estimate the probability of species presence from either abundance or presence-absence data collected across sites with repeated sampling occasions. In the last two decades, a broad class of…

Methodology · Statistics 2022-04-05 Wen-Han Hwang , Jakub Stoklosa , Lu-Fang Chen

The rapid expansion of citizen science initiatives has led to a significant growth of biodiversity databases, and particularly presence-only (PO) observations. PO data are invaluable for understanding species distributions and their…

Machine Learning · Computer Science 2026-01-14 Maxime Ryckewaert , Diego Marcos , Christophe Botella , Maximilien Servajean , Pierre Bonnet , Alexis Joly

In the face of significant biodiversity decline, species distribution models (SDMs) are essential for understanding the impact of climate change on species habitats by connecting environmental conditions to species occurrences.…

Machine Learning · Computer Science 2024-03-13 Robin Zbinden , Nina van Tiel , Marc Rußwurm , Devis Tuia

Abundance estimates from animal point-count surveys require accurate estimates of detection probabilities. The standard model for estimating detection from removal-sampled point-count surveys assumes that organisms at a survey site are…

Populations and Evolution · Quantitative Biology 2019-04-09 Adam Martin-Schwarze , Jarad Niemi , Philip Dixon

Detection heterogeneity is inherent to ecological data, arising from factors such as varied terrain or weather conditions, inconsistent sampling effort, or heterogeneity of individuals themselves. Incorporating additional covariates into a…

Applications · Statistics 2021-08-27 Daniel Turek , Claudia Wehrhahn , Olivier Gimenez

This paper focuses on a core task in computational sustainability and statistical ecology: species distribution modeling (SDM). In SDM, the occurrence pattern of a species on a landscape is predicted by environmental features based on…

Machine Learning · Computer Science 2021-02-19 Eugene Seo , Rebecca A. Hutchinson , Xiao Fu , Chelsea Li , Tyler A. Hallman , John Kilbride , W. Douglas Robinson

Species distribution modeling is a highly versatile tool for understanding the intricate relationship between environmental conditions and species occurrences. However, the available data often lacks information on confirmed species absence…

Quantitative Methods · Quantitative Biology 2024-06-18 Robin Zbinden , Nina van Tiel , Benjamin Kellenberger , Lloyd Hughes , Devis Tuia

Presence-only records may provide data on the distributions of rare species, but commonly suffer from large, unknown biases due to their typically haphazard collection schemes. Presence-absence or count data collected in systematic, planned…

Applications · Statistics 2014-08-08 William Fithian , Jane Elith , Trevor Hastie , David A. Keith

Determining spatial distributions of species and communities are key objectives of ecology and conservation. Joint species distribution models use multi-species detection-nondetection data to estimate species and community distributions.…

Applications · Statistics 2022-12-15 Jeffrey W. Doser , Andrew O. Finley , Sudipto Banerjee

Joint species distribution models (JSDM) are among the most important statistical tools in community ecology. They are routinely used for inference and various prediction tasks, such as to build species distribution maps or biomass…

Monitoring species distribution is vital for conservation efforts, enabling the assessment of environmental impacts and the development of effective preservation strategies. Traditional data collection methods, including citizen science,…

Machine Learning · Computer Science 2025-10-23 Chirag Padubidri , Pranesh Velmurugan , Andreas Lanitis , Andreas Kamilaris

Species distribution models (SDM) are a key tool in ecology, conservation and management of natural resources. Two key components of the state-of-the-art SDMs are the description for species distribution response along environmental…

Methodology · Statistics 2021-11-08 Jarno Vanhatalo , Marcelo Hartmann , Lari Veneranta

We focus on species distribution modeling using global-scale presence-only data, leveraging geographical and environmental features to map species ranges, as in previous studies. However, we innovate by integrating taxonomic classification…

Computer Vision and Pattern Recognition · Computer Science 2025-09-09 Srikumar Sastry , Xin Xing , Aayush Dhakal , Subash Khanal , Adeel Ahmad , Nathan Jacobs

We present a novel approach to ecological risk assessment by recasting the Species Sensitivity Distribution (SSD) method within a Bayesian nonparametric (BNP) framework. Widely mandated by environmental regulatory bodies globally, SSD has…

Methodology · Statistics 2026-02-05 Louise Alamichel , Julyan Arbel , Guillaume Kon Kam King , Igor Prünster

Species distribution models (SDMs) are widely used to predict species' geographic distributions, serving as critical tools for ecological research and conservation planning. Typically, SDMs relate species occurrences to environmental…

Machine Learning · Computer Science 2025-08-12 Hager Radi Abdelwahed , Mélisande Teng , Robin Zbinden , Laura Pollock , Hugo Larochelle , Devis Tuia , David Rolnick

Nonmonotone missing data arise routinely in empirical studies of social and health sciences, and when ignored, can induce selection bias and loss of efficiency. In practice, it is common to account for nonresponse under a missing-at-random…

Methodology · Statistics 2017-07-20 Eric J. Tchetgen Tchetgen , Linbo Wang , BaoLuo Sun

Conservation science depends on an accurate understanding of what's happening in a given ecosystem. How many species live there? What is the makeup of the population? How is that changing over time? Species Distribution Modeling (SDM) seeks…

Machine Learning · Computer Science 2021-07-23 Sara Beery , Elijah Cole , Joseph Parker , Pietro Perona , Kevin Winner
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