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Mechanisms of pattern formation---of which the Turing instability is an archetype---constitute an important class of dynamical processes occurring in biological, ecological and chemical systems. Recently, it has been shown that the Turing…

Disordered Systems and Neural Networks · Physics 2019-06-19 Sayat Mimar , Mariamo Mussa Juane , Juyong Park , Alberto P. Munuzuri , Gourab Ghoshal

Mathematical modelling of the evolution of the size-spectrum dynamics in aquatic ecosystems was discovered to be a powerful tool to have a deeper insight into impacts of human- and environmental driven changes on the marine ecosystem. In…

Analysis of PDEs · Mathematics 2024-01-02 Laura Kanzler , Benoit Perthame , Benoit Sarels

Much of our understanding of ecological and evolutionary mechanisms derives from analysis of low-dimensional models: with few interacting species, or few axes defining "fitness". It is not always clear to what extent the intuition derived…

Populations and Evolution · Quantitative Biology 2018-02-14 Mikhail Tikhonov , Remi Monasson

Biological evolution can be conceptualized as a search process in the space of gene sequences guided by the fitness landscape, a mapping that assigns a measure of reproductive value to each genotype. Here we discuss probabilistic models of…

Populations and Evolution · Quantitative Biology 2024-04-10 Joachim Krug , Daniel Oros

Landscapes are meaningful ecological units that strongly depend on the environmental conditions. Such dependencies between landscapes and the environment have been noted since the beginning of Earth sciences and cast into conceptual models…

Computer Vision and Pattern Recognition · Computer Science 2019-09-27 Christian Requena-Mesa , Markus Reichstein , Miguel Mahecha , Basil Kraft , Joachim Denzler

Spatial patterns are widely observed in numerous nonequilibrium natural systems, often undergoing complex transitions and bifurcations, thereby exhibiting significant importance in many physical and biological systems such as embryonic…

Biological Physics · Physics 2024-12-17 Jie Su , Wei Wu , Denis Patterson , Simon Asher Levin , Jin Wang

A central model in theoretical ecology considers the competition of a range of species for a broad spectrum of resources. Recent studies have shown that essentially two different outcomes are possible. Either the species surviving…

Populations and Evolution · Quantitative Biology 2010-04-05 Simone Pigolotti , Cristobal Lopez , Emilio Hernandez-Garcia , Ken Haste Andersen

Over the last decade, significant progress has been made in understanding complex biological systems, however there have been few attempts at incorporating this knowledge into nature inspired optimization algorithms. In this paper, we…

Neural and Evolutionary Computing · Computer Science 2009-07-03 James M. Whitacre , Ruhul A. Sarker , Q. Tuan Pham

In this paper, the global dynamics of two-species Lotka-Volterra competition models with nonlocal dispersals is studied. Under the assumption that dispersal kernels are symmetric, we prove that except for very special situations, local…

Analysis of PDEs · Mathematics 2015-12-09 Xueli Bai , Fang Li

This work studies a nonlocal extension of the Klausmeier vegetation model in $\mathbb{R}^N$ $(N \ge 1)$ that incorporates both local and nonlocal diffusion. The biomass dynamics are driven by a nonlocal convolution operator, representing…

Analysis of PDEs · Mathematics 2026-05-26 Md Shah Alam

Dryland vegetation can survive water stress by forming spatial patterns but is often subjected to herbivory as an additional stress that puts it at risk of desertification. Understanding the mutual relationships between vegetation…

Populations and Evolution · Quantitative Biology 2026-02-17 Joydeep Singha , Hannes Uecker , Ehud Meron

Vegetation patterns are a characteristic feature of semi-deserts occurring on all continents except Antarctica. In some semi-arid regions, the climate is characterised by seasonality, which yields a synchronisation of seed dispersal with…

Populations and Evolution · Quantitative Biology 2020-09-08 Lukas Eigentler , Jonathan A. Sherratt

Phenotypically structured equations arise in population biology to describe the interaction of species with their environment that brings the nutrients. This interaction usually leads to selection of the fittest individuals. Models used in…

Analysis of PDEs · Mathematics 2015-06-18 Alexander Lorz , Benoit Perthame

We analyze the spatio-temporal patterns of two competing species in the presence of two white noise sources: an additive noise acting on the interaction parameter and a multiplicative noise which affects directly the dynamics of the species…

Statistical Mechanics · Physics 2007-05-23 D. Valenti , A. Fiasconaro , B. Spagnolo

Based on a non-equilibrium mechanism for spatial pattern formation we study how position information can be controlled by locally coupled discrete dynamical networks, similar to gene regulation networks of cells in a developing…

Molecular Networks · Quantitative Biology 2009-08-26 Thimo Rohlf , Stefan Bornholdt

Coexistence of plants depends on their competition for common resources and indirect interactions mediated by shared exploiters or mutualists. These interactions are driven either by changes in animal abundance (density-mediated…

Populations and Evolution · Quantitative Biology 2019-08-12 Vlastimil Křivan , Tomás A. Revilla

Neural connectivity at the cellular and mesoscopic level appears very specific and is presumed to arise from highly specific developmental mechanisms. However, there are general shared features of connectivity in systems as different as the…

Neurons and Cognition · Quantitative Biology 2009-12-06 Marcus Kaiser , Claus C. Hilgetag , Arjen van Ooyen

We study an individual based model describing competition in space between two different alleles. Although the model is similar in spirit to classic models of spatial population genetics such as the stepping stone model, here however space…

Populations and Evolution · Quantitative Biology 2015-03-20 Simone Pigolotti , Roberto Benzi , Prasad Perlekar Mogens H. Jensen , Federico Toschi , David R. Nelson

A common assumption in causal modeling posits that the data is generated by a set of independent mechanisms, and algorithms should aim to recover this structure. Standard unsupervised learning, however, is often concerned with training a…

Machine Learning · Computer Science 2019-03-05 Francesco Locatello , Damien Vincent , Ilya Tolstikhin , Gunnar Rätsch , Sylvain Gelly , Bernhard Schölkopf

Mechanical interactions among cells in a growing microbial colony can significantly influence the colony's spatial genetic structure and, thus, evolutionary outcomes such as the fates of rare mutations. Here, we computationally investigate…

Soft Condensed Matter · Physics 2025-01-22 Mateusz Ratman , Jimmy Gonzalez Nuñez , Daniel A. Beller