Related papers: Avoiding approximate repetitions with respect to t…
Longest common subsequence ($\mathsf{LCS}$) is a classic and central problem in combinatorial optimization. While $\mathsf{LCS}$ admits a quadratic time solution, recent evidence suggests that solving the problem may be impossible in truly…
Many randomized approximation algorithms operate by giving a procedure for simulating a random variable $X$ which has mean $\mu$ equal to the target answer, and a relative standard deviation bounded above by a known constant $c$. Examples…
The shortest distance between the first $n$ iterates of a typical point can be quantified with a log rule for some dynamical systems admitting Gibbs measures. We show this in two settings. For topologically mixing Markov shifts with at most…
Multi-class classification with a very large number of classes, or extreme classification, is a challenging problem from both statistical and computational perspectives. Most of the classical approaches to multi-class classification,…
An absent word of a word y of length n is a word that does not occur in y. It is a minimal absent word if all its proper factors occur in y. Minimal absent words have been computed in genomes of organisms from all domains of life; their…
The main theme of this paper is the enumeration of the occurrence of a pattern in words and permutations. We mainly focus on asymptotic properties of the sequence $f_r^v(k,n),$ the number of $n$-array $k$-ary words that contain a given…
Using techniques from Poisson approximation, we prove explicit error bounds on the number of permutations that avoid any pattern. Most generally, we bound the total variation distance between the joint distribution of pattern occurrences…
In this paper we present $LCSk$++: a new metric for measuring the similarity of long strings, and provide an algorithm for its efficient computation. With ever increasing size of strings occuring in practice, e.g. large genomes of plants…
We investigate the variance of the length of the longest common subsequences of two independent random words of size $n$, where the letters of one word are i.i.d. uniformly drawn from $\{\alpha_1, \alpha_2, \cdots, \alpha_m\}$, while the…
We present the first sample compression algorithm for nearest neighbors with non-trivial performance guarantees. We complement these guarantees by demonstrating almost matching hardness lower bounds, which show that our bound is nearly…
With the use of ontologies in several domains such as semantic web, information retrieval, artificial intelligence, the concept of similarity measuring has become a very important domain of research. Therefore, in the current paper, we…
The \v{C}ern\'y conjecture states that every $n$-state synchronizing automaton has a reset word of length at most $(n-1)^2$. We study the hardness of finding short reset words. It is known that the exact version of the problem, i.e.,…
We propose a general method for optimization with semi-infinite constraints that involve a linear combination of functions, focusing on the case of the exponential function. Each function is lower and upper bounded on sub-intervals by…
Maximal repetition of a string is the maximal length of a repeated substring. This paper investigates maximal repetition of strings drawn from stochastic processes. Strengthening previous results, two new bounds for the almost sure growth…
A new line of research uses compression methods to measure the similarity between signals. Two signals are considered similar if one can be compressed significantly when the information of the other is known. The existing compression-based…
Random access to highly compressed strings -- represented by straight-line programs or Lempel-Ziv parses, for example -- is a well-studied topic. Random access to such strings in strongly sublogarithmic time is impossible in the worst case,…
Analyzing high-dimensional data with manifold learning algorithms often requires searching for the nearest neighbors of all observations. This presents a computational bottleneck in statistical manifold learning when observations of…
In this paper we present an application of a simple technique of local recompression, previously developed by the author in the context of compressed membership problems and compressed pattern matching, to word equations. The technique is…
Quasiperiodicity in strings was introduced almost 30 years ago as an extension of string periodicity. The basic notions of quasiperiodicity are cover and seed. A cover of a text $T$ is a string whose occurrences in $T$ cover all positions…
It is well-known that tensor decompositions show separations, that is, that constraints on local terms (such as positivity) may entail an arbitrarily high cost in their representation. Here we show that many of these separations disappear…