Related papers: Avoiding approximate repetitions with respect to t…
Recent works on word representations mostly rely on predictive models. Distributed word representations (aka word embeddings) are trained to optimally predict the contexts in which the corresponding words tend to appear. Such models have…
Motivated by the imminent growth of massive, highly redundant genomic databases, we study the problem of compressing a string database while simultaneously supporting fast random access, substring extraction and pattern matching to the…
This paper is concerned with the performance of Orthogonal Matching Pursuit (OMP) algorithms applied to a dictionary $\mathcal{D}$ in a Hilbert space $\mathcal{H}$. Given an element $f\in \mathcal{H}$, OMP generates a sequence of…
The approximate period recovery problem asks to compute all $\textit{approximate word-periods}$ of a given word $S$ of length $n$: all primitive words $P$ ($|P|=p$) which have a periodic extension at edit distance smaller than $\tau_p$ from…
We survey a new area of parameter-free similarity distance measures useful in data-mining, pattern recognition, learning and automatic semantics extraction. Given a family of distances on a set of objects, a distance is universal up to a…
We present an algorithm for approximating the edit distance $\operatorname{ed}(x, y)$ between two strings $x$ and $y$ in time parameterized by the degree to which one of the strings $x$ satisfies a natural pseudorandomness property. The…
From the output produced by a memoryless deletion channel from a uniformly random input of known length $n$, one obtains a posterior distribution on the channel input. The difference between the Shannon entropy of this distribution and that…
Zipf's law of abbreviation, the tendency of more frequent words to be shorter, is one of the most solid candidates for a linguistic universal, in the sense that it has the potential for being exceptionless or with a number of exceptions…
Zimin words are very special finite words which are closely related to the pattern-avoidability problem. This problem consists in testing if an instance of a given pattern with variables occurs in almost all words over any finite alphabet.…
Words are sequences of letters over a finite alphabet. We study two intimately related topics for this object: quasi-randomness and limit theory. With respect to the first topic we investigate the notion of uniform distribution of letters…
We study the problem of approximating Hamming distance in sublinear time under property-preserving hashing (PPH), where only hashed representations of inputs are available. Building on the threshold evaluation framework of Fleischhacker,…
We consider approximating analytic functions on the interval $[-1,1]$ from their values at a set of $m+1$ equispaced nodes. A result of Platte, Trefethen \& Kuijlaars states that fast and stable approximation from equispaced samples is…
In this paper, we present the concept of Approximate grammar and how it can be used to extract information from a documemt. As the structure of informational strings cannot be defined well in a document, we cannot use the conventional…
We study the approximability of Max Ones when the number of variable occurrences is bounded by a constant. For conservative constraint languages (i.e., when the unary relations are included) we give a complete classification when the number…
A minimal absent word of a sequence x, is a sequence yt hat is not a factorof x, but all of its proper factors are factors of x as well. The set of minimal absent words uniquely defines the sequence itself. In recent times minimal absent…
The method we have applied in "A. Bernini, L. Ferrari, R. Pinzani, Enumerating permutations avoiding three Babson-Steingrimsson patterns, Ann. Comb. 9 (2005), 137--162" to count pattern avoiding permutations is adapted to words. As an…
The length of the longest common subsequences (LCSs) is often used as a similarity measurement to compare two (or more) random words. Below we study its statistical behavior in mean and variance using a Monte-Carlo approach from which we…
A pattern $\alpha$ is a string of variables and terminal letters. We say that $\alpha$ matches a word $w$, consisting only of terminal letters, if $w$ can be obtained by replacing the variables of $\alpha$ by terminal words. The matching…
We develop the technique of reduced word manipulation to give a range of results concerning reduced words and permutations more generally. We prove a broad connection between pattern containment and reduced words, which specializes to our…
Sequence comparison is a prerequisite to virtually all comparative genomic analyses. It is often realised by sequence alignment techniques, which are computationally expensive. This has led to increased research into alignment-free…