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Hierarchical clustering and community detection are important problems in machine learning and complex network analysis. A common approach to identify clusters is to simply cut dendrograms at some threshold. However, single-level cuts are…

Physics and Society · Physics 2025-12-10 Louis Boucherie , Yong-Yeol Ahn , Sune Lehmann

We face a need of discovering a pattern in locations of a great number of points in a high-dimensional space. Goal is to group the close points together. We are interested in a hierarchical structure, like a B-tree. B-Trees are…

Data Structures and Algorithms · Computer Science 2016-07-19 Victor Sadikov , Oliver Rutishauser

OPTICS is a density-based clustering algorithm that performs well in a wide variety of applications. For a set of input objects, the algorithm creates a so-called reachability plot that can be either used to produce cluster membership…

Quantitative Methods · Quantitative Biology 2013-09-10 Gabor Ivan , Vince Grolmusz

A cluster tree provides a highly-interpretable summary of a density function by representing the hierarchy of its high-density clusters. It is estimated using the empirical tree, which is the cluster tree constructed from a density…

Statistics Theory · Mathematics 2017-02-14 Jisu Kim , Yen-Chi Chen , Sivaraman Balakrishnan , Alessandro Rinaldo , Larry Wasserman

Density-based clustering techniques are used in a wide range of data mining applications. One of their most attractive features con- sists in not making use of prior knowledge of the number of clusters that a dataset contains along with…

Machine Learning · Computer Science 2018-07-24 Roberto Pirrone , Vincenzo Cannella , Sergio Monteleone , Gabriella Giordano

We propose a novel perspective on varied-density clustering for high-dimensional data by framing it as a label propagation process in neighborhood graphs that adapt to local density variations. Our method formally connects density-based…

Machine Learning · Computer Science 2025-08-06 Ninh Pham , Yingtao Zheng , Hugo Phibbs

This paper proposes a simple but effective graph-based agglomerative algorithm, for clustering high-dimensional data. We explore the different roles of two fundamental concepts in graph theory, indegree and outdegree, in the context of…

Computer Vision and Pattern Recognition · Computer Science 2015-03-20 Wei Zhang , Xiaogang Wang , Deli Zhao , Xiaoou Tang

Joint representation of geometry, colour and semantics using a 3D neural field enables accurate dense labelling from ultra-sparse interactions as a user reconstructs a scene in real-time using a handheld RGB-D sensor. Our iLabel system…

Computer Vision and Pattern Recognition · Computer Science 2021-12-06 Shuaifeng Zhi , Edgar Sucar , Andre Mouton , Iain Haughton , Tristan Laidlow , Andrew J. Davison

BPEC is an R package for Bayesian Phylogeographic and Ecological Clustering which allows geographical, environmental and phenotypic measurements to be combined with DNA sequences in order to reveal clustered structure resulting from…

Applications · Statistics 2018-09-19 Ioanna Manolopoulou , Axel Hille , Brent Emerson

In this work, we introduce a novel methodology for divisive hierarchical clustering. Our divisive (``top-down'') approach is motivated by the fact that agglomerative hierarchical clustering (``bottom-up''), which is commonly used for…

Methodology · Statistics 2025-10-07 Jan O. Bauer

Clustering algorithms are fundamental tools across many fields, with density-based methods offering particular advantages in identifying arbitrarily shaped clusters and handling noise. However, their effectiveness is often limited by the…

Machine Learning · Computer Science 2025-12-01 Meysam Shirdel Bilehsavar , Razieh Ghaedi , Samira Seyed Taheri , Xinqi Fan , Christian O'Reilly

Graph clustering is a longstanding topic in machine learning. Recently, deep methods have achieved results but still require predefined cluster numbers K and struggle with imbalanced graphs. We study deep graph clustering without K…

Machine Learning · Computer Science 2026-02-03 Li Sun , Zhenhao Huang , Yujie Wang , Hongbo Lv , Chunyang Liu , Hao Peng , Philip S. Yu

Finding a suitable density function is essential for density-based clustering algorithms such as DBSCAN and DPC. A naive density corresponding to the indicator function of a unit $d$-dimensional Euclidean ball is commonly used in these…

Machine Learning · Computer Science 2021-10-15 Chao Zheng , Yingjie Chen , Chong Chen , Jianqiang Huang , Xian-Sheng Hua

Hierarchical clustering is a popular method for analyzing data which associates a tree to a dataset. Hartigan consistency has been used extensively as a framework to analyze such clustering algorithms from a statistical point of view.…

Machine Learning · Statistics 2015-07-14 Justin Eldridge , Mikhail Belkin , Yusu Wang

In data containing heterogeneous subpopulations, classification performance benefits from incorporating the knowledge of cluster structure in the classifier. Previous methods for such combined clustering and classification either 1) are…

Machine Learning · Computer Science 2023-01-04 Shivin Srivastava , Siddharth Bhatia , Lingxiao Huang , Lim Jun Heng , Kenji Kawaguchi , Vaibhav Rajan

The high dimensional and semantically complex nature of textual Big data presents significant challenges for text clustering, which frequently lead to suboptimal groupings when using conventional techniques like k-means or hierarchical…

Computation and Language · Computer Science 2025-08-25 Mohammad Wali Ur Rahman , Ric Nevarez , Lamia Tasnim Mim , Salim Hariri

Clustering algorithms are of fundamental importance when dealing with large unstructured datasets and discovering new patterns and correlations therein, with applications ranging from scientific research to medical imaging and marketing…

Quantum Physics · Physics 2023-02-10 Duarte Magano , Lorenzo Buffoni , Yasser Omar

Determining the best partition for a dataset can be a challenging task because of 1) the lack of a priori information within an unsupervised learning framework; and 2) the absence of a unique clustering validation approach to evaluate…

Machine Learning · Computer Science 2021-04-06 Isotta Landi , Veronica Mandelli , Michael V. Lombardo

This paper presents algorithms for hierarchical, agglomerative clustering which perform most efficiently in the general-purpose setup that is given in modern standard software. Requirements are: (1) the input data is given by pairwise…

Machine Learning · Statistics 2011-09-13 Daniel Müllner

The focus of this paper is on the evaluation of sixteen labeling methods for hierarchical document clusters over five datasets. All of the methods are independent from clustering algorithms, applied subsequently to the dendrogram…

Information Retrieval · Computer Science 2018-05-28 Maria Fernanda Moura , Fabiano Fernandes dos Santos , Solange Oliveira Rezende
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