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The text of clinical notes can be a valuable source of patient information and clinical assessments. Historically, the primary approach for exploiting clinical notes has been information extraction: linking spans of text to concepts in a…

Computation and Language · Computer Science 2019-06-11 Sarah Wiegreffe , Edward Choi , Sherry Yan , Jimeng Sun , Jacob Eisenstein

Bioinformatics workflows are essential for complex biological data analyses and are often described in scientific articles with source code in public repositories. Extracting detailed workflow information from articles can improve…

Computation and Language · Computer Science 2025-03-11 Clémence Sebe , Sarah Cohen-Boulakia , Olivier Ferret , Aurélie Névéol

This paper highlights the challenges, current trends, and open issues related to the representation, querying and analytics of content extracted from texts. The internet contains vast text-based information on various subjects, including…

Databases · Computer Science 2023-10-11 Genoveva Vargas-Solar , Mirian Halfeld Ferrari Alves , Anne-Lyse Minard Forst

Reading levels are highly individual and can depend on a text's language, a person's cognitive abilities, or knowledge on a topic. Text simplification is the task of rephrasing a text to better cater to the abilities of a specific target…

Computation and Language · Computer Science 2023-07-10 Björn Engelmann , Fabian Haak , Christin Katharina Kreutz , Narjes Nikzad Khasmakhi , Philipp Schaer

Recent advances in the healthcare industry have led to an abundance of unstructured data, making it challenging to perform tasks such as efficient and accurate information retrieval at scale. Our work offers an all-in-one scalable solution…

Information Retrieval · Computer Science 2023-02-15 Shreya Saxena , Raj Sangani , Siva Prasad , Shubham Kumar , Mihir Athale , Rohan Awhad , Vishal Vaddina

Understanding inferences and answering questions from text requires more than merely recovering surface arguments, adjuncts, or strings associated with the query terms. As humans, we interpret sentences as contextualized components of a…

Computation and Language · Computer Science 2022-10-24 Jingxuan Tu , Kyeongmin Rim , Eben Holderness , James Pustejovsky

In recent years extracting relevant information from biomedical and clinical texts such as research articles, discharge summaries, or electronic health records have been a subject of many research efforts and shared challenges. Relation…

Computation and Language · Computer Science 2016-07-01 Sunil Kumar Sahu , Ashish Anand , Krishnadev Oruganty , Mahanandeeshwar Gattu

Objective: Automatic text summarization tools can help users in the biomedical domain to access information efficiently from a large volume of scientific literature and other sources of text documents. In this paper, we propose a…

Information Retrieval · Computer Science 2018-11-26 Milad Moradi , Nasser Ghadiri

Text extraction is an important problem in image processing with applications from optical character recognition to autonomous driving. Most of the traditional text segmentation algorithms consider separating text from a simple background…

Computer Vision and Pattern Recognition · Computer Science 2017-07-12 Shervin Minaee , Yao Wang

Knowledge-based question answering relies on the availability of facts, the majority of which cannot be found in structured sources (e.g. Wikipedia info-boxes, Wikidata). One of the major components of extracting facts from unstructured…

Computation and Language · Computer Science 2018-03-28 Christos Christodoulopoulos , Arpit Mittal

Advances in information technology reduce barriers to information propagation, but at the same time they also induce the information overload problem. For the making of various decisions, mere digestion of the relevant information has…

Disordered Systems and Neural Networks · Physics 2009-11-11 Yi-Kuo Yu , Yi-Cheng Zhang , Paolo Laureti , Lionel Moret

Biomedical Information Extraction is an exciting field at the crossroads of Natural Language Processing, Biology and Medicine. It encompasses a variety of different tasks that require application of state-of-the-art NLP techniques, such as…

Computation and Language · Computer Science 2017-05-17 Surag Nair

The information available on web pages mostly contains semi-structured text documents which are represented either in XML, or HTML, or XHTML format that lacks formatted document structure. The document does not discriminate between the text…

Information Retrieval · Computer Science 2014-03-11 Sandeep Sirsat

Deidentification seeks to anonymize textual data prior to distribution. Automatic deidentification primarily uses supervised named entity recognition from human-labeled data points. We propose an unsupervised deidentification method that…

Computation and Language · Computer Science 2022-10-24 John X. Morris , Justin T. Chiu , Ramin Zabih , Alexander M. Rush

Keyphrases provide a simple way of describing a document, giving the reader some clues about its contents. Keyphrases can be useful in a various applications such as retrieval engines, browsing interfaces, thesaurus construction, text…

Information Retrieval · Computer Science 2010-04-20 Kamal Sarkar , Mita Nasipuri , Suranjan Ghose

Information extraction from conversational data is particularly challenging because the task-centric nature of conversation allows for effective communication of implicit information by humans, but is challenging for machines. The…

Computation and Language · Computer Science 2022-06-23 Sopan Khosla , Shikhar Vashishth , Jill Fain Lehman , Carolyn Rose

The complexity of sentences characteristic to biomedical articles poses a challenge to natural language parsers, which are typically trained on large-scale corpora of non-technical text. We propose a text simplification process,…

Computation and Language · Computer Science 2010-04-28 Siddhartha Jonnalagadda , Luis Tari , Jorg Hakenberg , Chitta Baral , Graciela Gonzalez

The scientific literature is growing exponentially, and professionals are no more able to cope with the current amount of publications. Text mining provided in the past methods to retrieve and extract information from text; however, most of…

Computation and Language · Computer Science 2019-02-27 Nikola Milosevic , Cassie Gregson , Robert Hernandez , Goran Nenadic

Open Information Extraction (OIE) is the task of the unsupervised creation of structured information from text. OIE is often used as a starting point for a number of downstream tasks including knowledge base construction, relation…

Computation and Language · Computer Science 2018-08-23 Paul Groth , Michael Lauruhn , Antony Scerri , Ron Daniel

We propose a simple method for post-processing the outputs of a text summarization system in order to refine its overall quality. Our approach is to train text-to-text rewriting models to correct information redundancy errors that may arise…

Computation and Language · Computer Science 2019-07-26 Nikola I. Nikolov , Alessandro Calmanovici , Richard H. R. Hahnloser