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In this paper we describe compressed indexes that support pattern matching queries for strings with wildcards. For a constant size alphabet our data structure uses $O(n\log^{\varepsilon}n)$ bits for any $\varepsilon>0$ and reports all…

Data Structures and Algorithms · Computer Science 2014-01-06 Moshe Lewenstein , Yakov Nekrich , Jeffrey Scott Vitter

We consider the problem of encoding two-dimensional arrays, whose elements come from a total order, for answering \topk{} queries. The aim is to obtain encodings that use space close to the information-theoretic lower bound, which can be…

Data Structures and Algorithms · Computer Science 2021-07-13 Seungbum Jo , Srinivasa Rao Satti

Given a set $S$ of $n$ points in the plane, we consider the problem of answering range selection queries on $S$: that is, given an arbitrary $x$-range $Q$ and an integer $k > 0$, return the $k$-th smallest $y$-coordinate from the set of…

Computational Geometry · Computer Science 2013-05-09 Meng He , J. Ian Munro , Patrick K. Nicholson

Geometric data structures have been extensively studied in the regime where the dimension is much smaller than the number of input points. But in many scenarios in Machine Learning, the dimension can be much higher than the number of points…

Data Structures and Algorithms · Computer Science 2025-04-07 Martin G. Herold , Danupon Nanongkai , Joachim Spoerhase , Nithin Varma , Zihang Wu

The $k$-mappability problem has two integers parameters $m$ and $k$. For every subword of size $m$ in a text $S$, we wish to report the number of indices in $S$ in which the word occurs with at most $k$ mismatches. The problem was lately…

Data Structures and Algorithms · Computer Science 2021-06-15 Amihood Amir , Itai Boneh , Eitan Kondratovsky

Given strings $P$ and $Q$ the (exact) string matching problem is to find all positions of substrings in $Q$ matching $P$. The classical Knuth-Morris-Pratt algorithm [SIAM J. Comput., 1977] solves the string matching problem in linear time…

Data Structures and Algorithms · Computer Science 2010-09-08 Philip Bille

We consider a range-search variant of the closest-pair problem. Let $\varGamma$ be a fixed shape in the plane. We are interested in storing a given set of $n$ points in the plane in some data structure such that for any specified translate…

Computational Geometry · Computer Science 2019-03-25 Jie Xue , Yuan Li , Saladi Rahul , Ravi Janardan

The "Subset Sum problem" is a very well-known NP-complete problem. In this work, a top-k variation of the "Subset Sum problem" is considered. This problem has wide application in recommendation systems, where instead of k best objects the k…

Data Structures and Algorithms · Computer Science 2021-08-27 Biswajit Sanyal , Subhashis Majumder , Priya Ranjan Sinha Mahapatra

We consider the problem of indexing a string $t$ of length $n$ to report the occurrences of a query pattern $p$ containing $m$ characters and $j$ wildcards. Let $occ$ be the number of occurrences of $p$ in $t$, and $\sigma$ the size of the…

Data Structures and Algorithms · Computer Science 2012-09-07 Philip Bille , Inge Li Goertz , Hjalte Wedel Vildhøj , Søren Vind

We present a data structure that we call a Dynamic Representative Set. In its most basic form, it is given two parameters $0< k < n$ and allows us to maintain a representation of a family $\mathcal{F}$ of subsets of $\{1,\ldots,n\}$. It…

Data Structures and Algorithms · Computer Science 2025-12-10 Jesper Nederlof

We prove that some exact geometric pattern matching problems reduce in linear time to $k$-SUM when the pattern has a fixed size $k$. This holds in the real RAM model for searching for a similar copy of a set of $k\geq 3$ points within a set…

Computational Geometry · Computer Science 2020-03-27 Boris Aronov , Jean Cardinal

Although real-world text datasets, such as DNA sequences, are far from being uniformly random, average-case string searching algorithms perform significantly better than worst-case ones in most applications of interest. In this paper, we…

Data Structures and Algorithms · Computer Science 2018-01-16 Lorraine A. K. Ayad , Panagiotis Charalampopoulos , Costas S. Iliopoulos , Solon P. Pissis

We study the classical approximate string matching problem, that is, given strings $P$ and $Q$ and an error threshold $k$, find all ending positions of substrings of $Q$ whose edit distance to $P$ is at most $k$. Let $P$ and $Q$ have…

Data Structures and Algorithms · Computer Science 2011-03-21 Philip Bille

In the polytope membership problem, a convex polytope $K$ in $R^d$ is given, and the objective is to preprocess $K$ into a data structure so that, given a query point $q \in R^d$, it is possible to determine efficiently whether $q \in K$.…

Computational Geometry · Computer Science 2018-01-11 Sunil Arya , Guilherme D. da Fonseca , David M. Mount

We consider the problem of augmenting an $n$-vertex tree with one shortcut in order to minimize the diameter of the resulting graph. The tree is embedded in an unknown space and we have access to an oracle that, when queried on a pair of…

Data Structures and Algorithms · Computer Science 2018-10-03 Davide Bilò

We consider the following problem: Preprocess a set $\mathcal{S}$ of $n$ axis-parallel boxes in $\mathbb{R}^d$ so that given a query of an axis-parallel box in $\mathbb{R}^d$, the pairs of boxes of $\mathcal{S}$ whose intersection…

Computational Geometry · Computer Science 2018-01-24 Eunjin Oh , Hee-Kap Ahn

Given a simple polygon $P$ with $n$ vertices, we consider the problem of constructing a data structure for visibility queries: for any query point $q \in P$, compute the visibility polygon of $q$ in $P$. To obtain $O(\log n + k)$ query…

Computational Geometry · Computer Science 2026-05-06 Sujoy Bhore , Chih-Hung Liu , Anurag Murty Naredla , Yakov Nekrich , Eunjin Oh , André van Renssen , Frank Staals , Haitao Wang , Jie Xue

We revisit two well-known algorithmic problems on strings: computing a shortest unique substring (SUS) and a shortest absent substring (SAS) of a string $S$ of length $n$. Both problems admit folklore $\mathcal{O}(n)$-time solutions using…

Data Structures and Algorithms · Computer Science 2026-05-07 Panagiotis Charalampopoulos , Manal Mohamed , Solon P. Pissis , Hilde Verbeek , Wiktor Zuba

We study approximation algorithms for the following geometric version of the maximum coverage problem: Let P be a set of n weighted points in the plane. We want to place m a * b rectangles such that the sum of the weights of the points in P…

Computational Geometry · Computer Science 2015-05-12 Jian Li , Haitao Wang , Bowei Zhang , Ningye Zhang

This paper studies the \emph{subset sampling} problem. The input is a set $\mathcal{S}$ of $n$ records together with a function $\textbf{p}$ that assigns each record $v\in\mathcal{S}$ a probability $\textbf{p}(v)$. A query returns a random…

Data Structures and Algorithms · Computer Science 2023-07-24 Jinchao Huang , Sibo Wang
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