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We present a computational model to reconstruct trees of ancestors for animals with sexual reproduction. Through a recursive algorithm combined with a random number generator, it is possible to reproduce the number of ancestors for each…

Populations and Evolution · Quantitative Biology 2019-08-19 C. Jarne , M. Caruso

Inspired from modern out-of-equilibrium statistical physics models, a matrix product based framework permits the formal definition of random vectors (and random time series) whose desired joint distributions are a priori prescribed. Its key…

Statistical Mechanics · Physics 2012-03-21 Florian Angeletti , Eric Bertin , Patrice Abry

A formalism for describing the dynamics of Genetic Algorithms (GAs) using methods from statistical mechanics is applied to the problem of generalization in a perceptron with binary weights. The dynamics are solved for the case where a new…

Condensed Matter · Physics 2009-10-28 Magnus Rattray , Jonathan Shapiro

The focus of this paper is the analysis of real-time systems with recursion, through the development of good theoretical techniques which are implementable. Time is modeled using clock variables, and recursion using stacks. Our technique…

Formal Languages and Automata Theory · Computer Science 2017-07-11 S. Akshay , Paul Gastin , Shankara Narayanan Krishna , Ilias Sarkar

We consider the generalized pure state density matrix which depends on different time moments. The evolution equation for this density matrix is obtained in case where the density matrix corresponds to the solutions of Gross-Pitaevskii…

Quantum Physics · Physics 2019-02-12 V. N. Chernega , O. V. Man'ko , V. I. Man'ko

We construct a family of genealogy-valued Markov processes that are induced by a continuous-time Markov population process. We derive exact expressions for the likelihood of a given genealogy conditional on the history of the underlying…

Probability · Mathematics 2022-01-26 Aaron A. King , Qianying Lin , Edward L. Ionides

This contribution is concerned with mathematical models for the dynamics of the genetic composition of populations evolving under recombination. Recombination is the genetic mechanism by which two parent individuals create the mixed type of…

Populations and Evolution · Quantitative Biology 2011-01-12 Ellen Baake

The paper discusses a connection between asymmetric reproduction -- that is reproduction in a parent-child relationship where the parent does not mutate during reproduction --, the fact that all non-viral lifeforms bear genes of their…

Populations and Evolution · Quantitative Biology 2015-08-11 Norbert Michael Mayer

The analysis of many problems of interest associated with Markov chains, e.g. stationary distributions, moments of first passage time distributions and moments of occupation time random variables, involves the solution of a system of linear…

Probability · Mathematics 2012-08-29 Jeffrey J. Hunter

We construct a pathwise formulation for a multi-type age-structured population dynamics, which involves an age-dependent cell replication and transition of gene- or phenotypes. By employing the formulation, we derive a variational…

Statistical Mechanics · Physics 2019-01-16 Yuki Sughiyama , So Nakashima , Tetsuya J. Kobayashi

Generating multivariate time series is a promising approach for sharing sensitive data in many medical, financial, and IoT applications. A common type of multivariate time series originates from a single source such as the biometric…

Machine Learning · Computer Science 2022-12-16 Ali Seyfi , Jean-Francois Rajotte , Raymond T. Ng

We present an algorithm that can efficiently compute a broad class of inferences for discrete-time imprecise Markov chains, a generalised type of Markov chains that allows one to take into account partially specified probabilities and other…

Probability · Mathematics 2019-07-02 Natan T'Joens , Thomas Krak , Jasper De Bock , Gert de Cooman

We study the problem of characterizing the expected hitting times for a robust generalization of continuous-time Markov chains. This generalization is based on the theory of imprecise probabilities, and the models with which we work…

Probability · Mathematics 2022-06-28 Thomas Krak

We consider the fluctuations of a time-integrated particle current around an atypical value in a generic stochastic Markov process involving classical particles with two-site interaction and hardcore repulsion on a finite one-dimensional…

Statistical Mechanics · Physics 2016-01-20 Pegah Torkaman , Farhad H. Jafarpour

All one-condition generalized inverses of the Markovian kernel I - P, where P is the transition matrix of a finite irreducible Markov chain, can be uniquely specified in terms of the stationary probabilities and the mean first passage times…

Probability · Mathematics 2014-03-05 Jeffrey J. Hunter

We consider a population with non-overlapping generations, whose size goes to infinity. It is described by a discrete genealogy which may be time non-homogeneous and we pay special attention to branching trees in varying environments. A…

Probability · Mathematics 2013-05-22 Vincent Bansaye , Chunmao Huang

Although recent generative models can produce time series with close marginal distributions, they often face a fundamental tension between preserving global temporal structure and modeling stochastic local variations, particularly for…

Machine Learning · Computer Science 2026-03-23 Shaoshuai Du , Joze M. Rozanec , Andy Pimentel , Ana-Lucia Varbanescu

We study a density-dependent Markov jump process describing a population where each individual is characterized by a type, and reproduces at rates depending both on its type and on the population type distribution. We are interested in the…

Probability · Mathematics 2026-02-26 Madeleine Kubasch

We present a generative model of human mobility in which trajectories arise as realizations of a prescribed, time-dependent Markov dynamics defined on a spatial interaction network. The model constructs a hierarchical routing structure with…

Social and Information Networks · Computer Science 2026-01-12 David A. Meyer , Asif Shakeel

We focus on generative AI for a type of data that still represent one of the most prevalent form of data: tabular data. Our paper introduces two key contributions: a new powerful class of forest-based models fit for such tasks and a simple…

Machine Learning · Computer Science 2024-11-15 Richard Nock , Mathieu Guillame-Bert
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