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These lecture notes introduce the statistical analysis of continuous-time generative models built from Markov dynamics. We begin with the stochastic-calculus foundations of score-based diffusion models, including time reversal, score…

Statistics Theory · Mathematics 2026-04-27 Eddie Aamari , Arthur Stéphanovitch

Studies of fixation dynamics in Markov processes predominantly focus on the mean time to absorption. This may be inadequate if the distribution is broad and skewed. We compute the distribution of fixation times in one-step birth-death…

Statistical Mechanics · Physics 2015-10-30 Peter Ashcroft , Arne Traulsen , Tobias Galla

In real world domains, most graphs naturally exhibit a hierarchical structure. However, data-driven graph generation is yet to effectively capture such structures. To address this, we propose a novel approach that recursively generates…

Machine Learning · Computer Science 2023-06-01 Mahdi Karami , Jun Luo

We present a probabilistic 3D generative model, named Generative Cellular Automata, which is able to produce diverse and high quality shapes. We formulate the shape generation process as sampling from the transition kernel of a Markov…

Computer Vision and Pattern Recognition · Computer Science 2021-03-09 Dongsu Zhang , Changwoon Choi , Jeonghwan Kim , Young Min Kim

We address the problem of community detection in networks by introducing a general definition of Markov stability, based on the difference between the probability fluxes of a Markov chain on the network at different time scales. The…

Physics and Society · Physics 2020-05-05 Aurelio Patelli , Andrea Gabrielli , Giulio Cimini

We give an explicit formula for the time projection in an arbitrary von Neumann algebra from which all its basic properties can be easily derived. The analysis of the situation when this time projection is a conditional expectation is also…

Operator Algebras · Mathematics 2007-05-23 Andrzej Luczak

Here, we present a family of time series with a simple growth constraint. This family can be the basis of a model to apply to emerging computation in business and micro-economy where global functions can be expressed from local rules. We…

Symbolic Computation · Computer Science 2007-08-17 Luaï Jaff , Gérard H. E. Duchamp , Hatem Hadj Kacem , Cyrille Bertelle

We provide formulas for generating functions of many types of paths in various rooted tree structures. We compute the $k$th moment of the generating functions for various types of vertical paths. In two specific familes of trees we find…

Combinatorics · Mathematics 2018-10-03 Keith Copenhaver

We consider a simple discrete-time Markov chain with values in $[0,\infty)^{Z^d}$. The Markov chain describes various interesting examples such as oriented percolation, directed polymers in random environment, time discretizations of binary…

Probability · Mathematics 2009-06-26 Nobuo Yoshida

Given an elementary chain of vertex set V, seen as a labelling of V by the set {1, ...,n=|V|}, and another discrete structure over $V$, say a graph G, the problem of common intervals is to compute the induced subgraphs G[I], such that $I$…

Data Structures and Algorithms · Computer Science 2013-09-30 Ismael Belghiti , Michel Habib

Consider a Markov chain with finite state $\{0, 1, ..., d\}$. We give the generation functions (or Laplace transforms) of absorbing (passage) time in the following two situations : (1) the absorbing time of state $d$ when the chain starts…

Probability · Mathematics 2014-12-09 Wenming Hong , Ke Zhou

The evolutionary process has been modelled in many ways using both stochastic and deterministic models. We develop an algebraic model of evolution in a population of asexually reproducing organisms in which we represent a stochastic walk in…

Populations and Evolution · Quantitative Biology 2013-01-18 Daniel Nichol , Peter Jeavons , Robert Bonomo , Philip K. Maini , Jerome L. Paul , Robert A. Gatenby , Alexander R. A. Anderson , Jacob G. Scott

Temporal graphs represent graph evolution over time, and have been receiving considerable research attention. Work on expressing temporal graph patterns or discovering temporal motifs typically assumes relatively simple temporal…

Databases · Computer Science 2022-05-31 Amir Pouya Aghasadeghi , Jan Van den Bussche , Julia Stoyanovich

The modeling of time series is becoming increasingly critical in a wide variety of applications. Overall, data evolves by following different patterns, which are generally caused by different user behaviors. Given a time series, we define…

Machine Learning · Computer Science 2022-07-13 Wenjie Hu , Jianping Huang , Liang Wu , Yang Yang , Zongtao Liu , Zhanlin Sun , Bingshen Yao , Ke Chen

We consider a family of general branching processes with reproduction parameters depending on the age of the individual as well as the population age structure and a parameter $K$, which may represent the carrying capacity. These processes…

Probability · Mathematics 2019-02-06 Jie Yen Fan , Kais Hamza , Peter Jagers , Fima C. Klebaner

In this study, a new extension of the Markov Renewal theory is introduced by allowing time to evolve in multiple dimensions. The resulting chains are referred to as multi-time Markov Renewal chains and since this extension is new, the state…

Probability · Mathematics 2025-08-21 Leonidas Kordalis , Samis Trevezas

Generative models for source code are an interesting structured prediction problem, requiring to reason about both hard syntactic and semantic constraints as well as about natural, likely programs. We present a novel model for this problem…

Machine Learning · Computer Science 2019-04-18 Marc Brockschmidt , Miltiadis Allamanis , Alexander L. Gaunt , Oleksandr Polozov

P. Kabamba developed generation theory as a tool for studying self-reproducing systems. We provide an alternative definition of a generation system and give a complete solution to the problem of finding optimal seeds for a finite…

Artificial Intelligence · Computer Science 2022-12-13 Rita Gitik

We develop a new thermodynamic approach to stochastic graph-rewriting. The ingredients are a finite set of reversible graph-rewriting rules called generating rules, a finite set of connected graphs P called energy patterns and an energy…

Logic in Computer Science · Computer Science 2017-01-11 Vincent Danos , Russell Harmer , Ricardo Honorato-Zimmer

Biological time can be measured in two ways: in generations and in physical (chronological) time. When generations overlap, these two notions diverge, which impedes our ability to relate mathematical models to real populations. In this…

Populations and Evolution · Quantitative Biology 2026-04-08 Kaan Öcal , Michael P. H. Stumpf