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Osteocytes and their cell processes reside in a large, interconnected network of voids pervading the mineralized bone matrix of most vertebrates. This osteocyte lacuno-canalicular network (OLCN) is believed to play important roles in…

Cortical bone is a tough biological material composed of tube-like osteons embedded in the organic matrix surrounded by weak interfaces known as cement lines. The cement lines provide a microstructurally preferable crack path, hence…

Applied Physics · Physics 2024-05-24 Shashank Gupta , Reza Moini

A simulation approach to the stochastic growth of bacterial towers is presented, in which a non-uniform and finite nutrient supply essentially determines the emerging structure through elementary chemotaxis. The method is based on cellular…

Populations and Evolution · Quantitative Biology 2009-11-10 J. O. Indekeu , C. V. Giuraniuc

Acidosis in tumors arises from reprogrammed metabolism and compromised vasculature, creating a harsh, acidic microenvironment that drives the evolutionary selection of acid-resistant cell phenotypes. A mathematical model is proposed to…

Tissues and Organs · Quantitative Biology 2025-12-30 Prithvi Anickode , Fabio Milner

In this study, we explore a mathematical model for tissue growth focusing on the interplay between multiple cell subpopulations with distinct phenotypic characteristics. The model addresses the dynamics of tissue growth influenced by…

Analysis of PDEs · Mathematics 2024-09-05 Tomasz Dębiec , Mainak Mandal , Markus Schmidtchen

Bone healing process includes four phases: inflammatory response, soft callus formation, hard callus development, and remodeling. Mechanobiological models have been used to investigate the role of various mechanical and biological factors…

Tissues and Organs · Quantitative Biology 2018-08-15 Mohammad S. Ghiasi , Jason E. Chen , Edward K. Rodriguez , Ashkan Vaziri , Ara Nazarian

Representations of population models in terms of countable systems of particles are constructed, in which each particle has a `type', typically recording both spatial position and genetic type, and a level. For finite intensity models, the…

Probability · Mathematics 2018-06-05 Alison M. Etheridge , Thomas G. Kurtz

Proteins are a matter of dual nature. As a physical object, a protein molecule is a folded chain of amino acids with multifarious biochemistry. But it is also an instantiation along an evolutionary trajectory determined by the function…

Biomolecules · Quantitative Biology 2019-09-04 Jean-Pierre Eckmann , Jacques Rougemont , Tsvi Tlusty

The mechanical behaviour of solid biological tissues has long been described using models based on classical continuum mechanics. However, the classical continuum theories of elasticity and viscoelasticity cannot easily capture the…

Biological Physics · Physics 2017-05-16 Shakti N. Menon , Cameron L. Hall , Scott W. McCue , D. L. Sean McElwain

Bacteria often develop distinct phenotypes to adapt to environmental stress. In particular, they can produce biofilms, dense communities of bacteria that live in a complex extracellular matrix. Bacterial biofilms provide a safe haven from…

Quantitative Methods · Quantitative Biology 2025-08-29 Stephen Williams , Daravuth Cheam , Michele K. Nishiguchi , Suzanne S. Sindi , Shilpa Khatri , Erica M. Rutter

Bone structure in mammals involves a complex network of channels (Havers and Volkmann channels) required to nourish the bone marrow cells. This work describes how three-dimensional reconstructions of such systems can be obtained and…

Tissues and Organs · Quantitative Biology 2007-09-19 Luciano da Fontoura Costa , Matheus Palhares Viana , Marcelo E. Beletti

We perform mathematical anaysis of the biofilm development process. A model describing biomass growth is proposed: It arises from coupling three parabolic nonlinear equations: a biomass equation with degenerate and singular diffusion, a…

Analysis of PDEs · Mathematics 2017-03-14 Maria Gokieli , Nobuyuki Kenmochi , Marek Niezgódka

During growth, tissue expands and deforms. Given its elastic properties, stresses emerge in an expanding and deforming tissue. Cell rearrangements can dissipate these stresses and numerous experiments confirm the viscoelastic properties of…

Tissues and Organs · Quantitative Biology 2017-10-20 M. D. Peters , D. Iber

Under low concentrations of antibiotics causing DNA damage, \textit{Escherichia coli} bacteria can trigger stochastically a stress response known as the SOS response. While the expression of this stress response can make individual cells…

Analysis of PDEs · Mathematics 2024-03-21 Meriem El Karoui , Ignacio Madrid , Sylvie Méléard

Several biological tissues undergo changes in their geometry and in their bulk material properties by modelling and remodelling processes. Modelling synthesises tissue in some regions and removes tissue in others. Remodelling overwrites old…

Tissues and Organs · Quantitative Biology 2016-05-13 Pascal R. Buenzli

In Part I of this article we have developed a novel mechanobiological model of a Tissue Engineering process that accounts for the mechanisms through which an isotropic or anisotropic adherence condition regulates the active functions of the…

Numerical Analysis · Mathematics 2015-12-14 Chiara Lelli , Riccardo Sacco , Paola Causin , Manuela T. Raimondi

Bone marrow stromal cells (BMSC) -- which include skeletal stem cells -- are a promising tool in regenerative medicine. However, their heterogeneous and unpredictable in vivo behaviour remains a critical barrier preventing the development…

The emergence of a body axis is a fundamental step in the development of multicellular organisms. In simple systems such as $\textit{Hydra}$, growing evidence suggests that mechanical forces generated by collective cellular activity play a…

Soft Condensed Matter · Physics 2026-01-09 Arthur Hernandez , Cuncheng Zhu , Luca Giomi

Osteoporosis is a prevalent bone disease that causes fractures in fragile bones, leading to a decline in daily living activities. Dual-energy X-ray absorptiometry (DXA) and quantitative computed tomography (QCT) are highly accurate for…

Image and Video Processing · Electrical Eng. & Systems 2023-07-24 Yi Gu , Yoshito Otake , Keisuke Uemura , Mazen Soufi , Masaki Takao , Hugues Talbot , Seiji Okada , Nobuhiko Sugano , Yoshinobu Sato

This paper studies foot bone geometrical shape and its mass distribution and establishes an assessment method of bone strength. Using spiral CT scanning, with an accuracy of sub-millimeter, we analyze the data of 384 pieces of foot bones in…

Biological Physics · Physics 2011-12-30 Yifang Fan , Mushtaq Loan , Yubo Fan , Zhiyu Lin , Changsheng Lv