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Recently, persistent homology has had tremendous success in biomolecular data analysis. It works by examining the topological relationship or connectivity of a group of atoms in a molecule at a variety of scales, then rendering a family of…

Biomolecules · Quantitative Biology 2019-03-27 David Bramer , Guo-Wei Wei

Persistent homology is a method for probing topological properties of point clouds and functions. The method involves tracking the birth and death of topological features (2000) as one varies a tuning parameter. Features with short…

This paper focuses on analyzing and differentiating between lattice linear problems and algorithms. It introduces a new class of algorithms called \textit{(fully) lattice linear algorithms}. A property of these algorithms is that they…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-11-11 Arya Tanmay Gupta , Sandeep S Kulkarni

We develop a novel hierarchy for zero-dimensional persistence pairs, i.e., connected components, which is capable of capturing more fine-grained spatial relations between persistence pairs. Our work is motivated by a lack of spatial…

Algebraic Topology · Mathematics 2021-01-20 Bastian Rieck , Filip Sadlo , Heike Leitte

The congruence lattices of all algebras defined on a fixed finite set $A$ ordered by inclusion form a finite atomistic lattice $\mathcal E$. We describe the atoms and coatoms. Each meet-irreducible element of $\mathcal E$ being determined…

General Mathematics · Mathematics 2017-02-27 Danica Jakubíková-Studenovská , Reinhard Pöschel , Sándor Radeleczki

We propose a functorial framework for persistent homology based on finite topological spaces and their associated posets. Starting from a finite metric space, we associate a filtration of finite topologies whose structure maps are…

Algebraic Topology · Mathematics 2026-02-24 Selçuk Kayacan

Persistent homology captures the evolution of topological features of a model as a parameter changes. The most commonly used summary statistics of persistent homology are the barcode and the persistence diagram. Another summary statistic,…

Methodology · Statistics 2016-04-01 Violeta Kovacev-Nikolic , Peter Bubenik , Dragan Nikolić , Giseon Heo

The superamalgamation property is a strong form of the amalgamation property which applies to ordered structures; it has found many applications in algebraic logic. We show that superamalgamation has some interest also from the pure…

Logic · Mathematics 2023-06-13 Paolo Lipparini

Persistent homology is a tool that can be employed to summarize the shape of data by quantifying homological features. When the data is an object in $\mathbb{R}^d$, the (augmented) persistent homology transform ((A)PHT) is a family of…

Computational Geometry · Computer Science 2022-12-27 Brittany Terese Fasy , Samuel Micka , David L. Millman , Anna Schenfisch , Lucia Williams

The peculiar phase-ordering properties of a lattice of coupled chaotic maps studied recently (A. Lema\^\i tre & H. Chat\'e, {\em Phys. Rev. Lett.} {\bf 82}, 1140 (1999)) are revisited with the help of detailed investigations of interface…

Statistical Mechanics · Physics 2016-08-15 Julien Kockelkoren , Anaël Lemaître , Hugues Chaté

Complex systems are difficult to study not only because they are nonlinear, multiscale, and often nonstationary, but because their scientifically relevant organization is often invisible at the level of individual components, pairwise…

Physics and Society · Physics 2026-03-30 Mark M. Bailey

We investigate the representation of lattices as sublattices of the lattice of all convex subsets (intervals) of a linearly ordered set $(X,\le)$. We introduce the purely lattice-theoretic notion of a \textit{loc-lattice} and prove that…

General Mathematics · Mathematics 2026-03-23 P. Douka , V. Felouzis

This paper first gives a necessary and sufficient condition that a lattice $L$ can be represented as the collection of all up-sets of a poset. Applying the condition, it obtains a necessary and sufficient condition that a lattice can be…

Representation Theory · Mathematics 2017-01-17 Peng He , Xue-ping Wang

The theory of multidimensional persistent homology was initially developed in the discrete setting, and involved the study of simplicial complexes filtered through an ordering of the simplices. Later, stability properties of…

Computational Geometry · Computer Science 2013-03-28 Niccolò Cavazza , Marc Ethier , Patrizio Frosini , Tomasz Kaczynski , Claudia Landi

A resolution of the intersection of a finite number of subgroups of an abelian group by means of their sums is constructed, provided the lattice generated by these subgroups is distributive. This is used for detecting singularities of…

K-Theory and Homology · Mathematics 2009-11-02 Tomasz Maszczyk

Artificial neural networks can learn complex, salient data features to achieve a given task. On the opposite end of the spectrum, mathematically grounded methods such as topological data analysis allow users to design analysis pipelines…

Machine Learning · Computer Science 2022-12-29 Mattia G. Bergomi , Massimo Ferri , Alessandro Mella , Pietro Vertechi

The stability of topological persistence is one of the fundamental issues in topological data analysis. Numerous methods have been proposed to address the stability of persistent modules or persistence diagrams. Recently, the concept of…

Algebraic Topology · Mathematics 2024-12-24 Jian Liu , Jingyan Li , Jie Wu

In this work, we present a generalization of extended persistent homology to filtrations of graded sub-groups by defining relative homology in this setting. Our work provides a more comprehensive and flexible approach to get an algebraic…

Algebraic Topology · Mathematics 2023-11-01 Fang Sun , Shengwen Xie , Xuezhi Zhao

As complex networks find applications in a growing range of disciplines, the diversity of naturally occurring and model networks being studied is exploding. The adoption of a well-developed collection of network taxonomies is a natural…

Combinatorics · Mathematics 2016-01-25 Ann Sizemore , Chad Giusti , Danielle Bassett

A mixed lattice is a lattice-type structure consisting of a set with two partial orderings, and generalizing the notion of a lattice. Mixed lattice theory has previously been studied in various algebraic structures, such as groups and…

Combinatorics · Mathematics 2024-04-10 Jani Jokela
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