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The \emph{distance-number} of a graph $G$ is the minimum number of distinct edge-lengths over all straight-line drawings of $G$ in the plane. This definition generalises many well-known concepts in combinatorial geometry. We consider the…

Combinatorics · Mathematics 2008-09-09 Paz Carmi , Vida Dujmović , Pat Morin , David R. Wood

Lipman et al. [ACM Transactions on Graphics 29 (3) (2010), 1--11] introduced the concept of biharmonic distance to measure the distances between pairs of points on a 3D surface. Biharmonic distance has some advantages over resistance…

Combinatorics · Mathematics 2022-09-08 Yulong Wei , Rong-hua Li , Weihua Yang

To investigate the topological structure of planar polygon decomposition on trapezoids, which is formed by height functions. We use the oriented Reeb graph of the function with a marked vertex. We describe all possible optimal Reeb graphs…

Geometric Topology · Mathematics 2024-04-11 Oleksandr Pryshliak , Karolina Haieva

We introduce the concept of distance mean-regular graph, which can be seen as a generalization of both vertex-transitive and distance-regular graphs. Let $\Gamma$ be a graph with vertex set $V$, diameter $D$, adjacency matrix $A$, and…

Combinatorics · Mathematics 2015-08-18 V. Diego , M. A. Fiol

Revealing hidden geometry and topology in noisy data sets is a challenging task. Elastic principal graph is a computationally efficient and flexible data approximator based on embedding a graph into the data space and minimizing the energy…

Data Structures and Algorithms · Computer Science 2019-09-25 A. N. Gorban , E. M. Mirkes , A. Zinovyev

For a smooth function on a smooth manifold of a suitable class, the space of all connected components of preimages is the graph and called the {\it Reeb graph}. Reeb graphs are fundamental tools in the algebraic and differential topological…

Geometric Topology · Mathematics 2022-03-28 Naoki Kitazawa

Graph coarsening aims to diminish the size of a graph to lighten its memory footprint, and has numerous applications in graph signal processing and machine learning. It is usually defined using a reduction matrix and a lifting matrix,…

Machine Learning · Computer Science 2026-01-29 Antonin Joly , Nicolas Keriven , Aline Roumy

The biharmonic distance is a fundamental metric on graphs that measures the dissimilarity between two nodes, capturing both local and global structures. It has found applications across various fields, including network centrality, graph…

Social and Information Networks · Computer Science 2026-01-16 Dehong Zheng , Zhongzhi Zhang

We introduce the concept of weighted persistence diagrams and develop a functorial pipeline for constructing them from finite metric measure spaces. This builds upon an existing functorial framework for generating classical persistence…

Algebraic Topology · Mathematics 2025-04-17 Aziz Burak Gülen , Facundo Mémoli , Amit Patel

For many graph-related problems, it can be essential to have a set of structurally diverse graphs. For instance, such graphs can be used for testing graph algorithms or their neural approximations. However, to the best of our knowledge, the…

Machine Learning · Computer Science 2024-12-13 Fedor Velikonivtsev , Mikhail Mironov , Liudmila Prokhorenkova

In many real-world applications data come as discrete metric spaces sampled around 1-dimensional filamentary structures that can be seen as metric graphs. In this paper we address the metric reconstruction problem of such filamentary…

Computational Geometry · Computer Science 2013-05-07 Frédéric Chazal , Jian Sun

In this paper, we propose a novel function named Rate Distortion-in-Distortion (RDD) function as an extension of the classical rate-distortion (RD) function, where the expected distortion constraint is replaced by a Gromov-type distortion.…

Information Theory · Computer Science 2025-07-25 Lingyi Chen , Haoran Tang , Shitong Wu , Jiakun Liu , Huihui Wu , Wenyi Zhang , Hao Wu

Distances on merge trees facilitate visual comparison of collections of scalar fields. Two desirable properties for these distances to exhibit are 1) the ability to discern between scalar fields which other, less complex topological…

Computational Geometry · Computer Science 2022-10-18 Brian Bollen , Pasindu Tennakoon , Joshua A. Levine

We present theory and practice for robust implementations of bivariate Jacobi set and Reeb space algorithms. Robustness is a fundamental topic in computational geometry that deals with the issues of numerical errors and degenerate cases in…

Computational Geometry · Computer Science 2025-10-10 Petar Hristov , Ingrid Hotz , Talha Bin Masood

Approximation of scattered data is often a task in many engineering problems. The Radial Basis Function (RBF) approximation is appropriate for large scattered (unordered) datasets in d-dimensional space. This approach is useful for a higher…

Numerical Analysis · Computer Science 2018-06-21 Zuzana Majdisova , Vaclav Skala

Theoretical results from discrete geometry suggest that normed spaces can abstractly embed finite metric spaces with surprisingly low theoretical bounds on distortion in low dimensions. In this paper, inspired by this theoretical insight,…

Machine Learning · Computer Science 2023-12-05 Diaaeldin Taha , Wei Zhao , J. Maxwell Riestenberg , Michael Strube

Distances are pervasive in machine learning. They serve as similarity measures, loss functions, and learning targets; it is said that a good distance measure solves a task. When defining distances, the triangle inequality has proven to be a…

Machine Learning · Computer Science 2020-07-08 Silviu Pitis , Harris Chan , Kiarash Jamali , Jimmy Ba

Graphs are a basic tool for the representation of modern data. The richness of the topological information contained in a graph goes far beyond its mere interpretation as a one-dimensional simplicial complex. We show how topological…

Combinatorics · Mathematics 2018-10-11 Mattia G. Bergomi , Massimo Ferri , Lorenzo Zuffi

Topological data analysis can provide insight on the structure of weighted graphs and digraphs. However, some properties underlying a given (di)graph are hardly mappable to simplicial complexes. We introduce \textit{steady} and…

Computational Geometry · Computer Science 2022-08-30 Mattia G. Bergomi , Massimo Ferri , Antonella Tavaglione

We present a method for learning "spectrally descriptive" edge weights for graphs. We generalize a previously known distance measure on graphs (Graph Diffusion Distance), thereby allowing it to be tuned to minimize an arbitrary loss…

Machine Learning · Computer Science 2021-07-01 Cory Braker Scott , Eric Mjolsness , Diane Oyen , Chie Kodera , David Bouchez , Magalie Uyttewaal
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