Related papers: Longest common subsequences in binary sequences

In this paper, we consider a generalized longest common subsequence problem, the string-excluding constrained LCS problem. For the two input sequences $X$ and $Y$ of lengths $n$ and $m$, and a constraint string $P$ of length $r$, the…

The Longest Common Subsequence (LCS) problem is a fundamental problem of sequence comparison. A natural approximation to this problem is a model in which every pairs of letters of two ``sequences'' are matched independently of the other…

This paper investigates the approximability of the Longest Common Subsequence (LCS) problem. The fastest algorithm for solving the LCS problem exactly runs in essentially quadratic time in the length of the input, and it is known that under…

Constant-weight and constant-charge binary sequences with constrained run length of zeros are introduced. For these sequences, the weight and the charge distribution are found. Then, recurrent and direct formulas for calculating the number…

This paper performs the analysis necessary to bound the running time of known, efficient algorithms for generating all longest common subsequences. That is, we bound the running time as a function of input size for algorithms with time…

The distributions of the $m$-th longest runs of multivariate random sequences are considered. For random sequences made up of $k$ kinds of letters, the lengths of the runs are sorted in two ways to give two definitions of run length…

We consider the longest common subsequence (LCS) problem with the restriction that the common subsequence is required to consist of at least $k$ length substrings. First, we show an $O(mn)$ time algorithm for the problem which gives a…

Let $X_1, X_2, ..., X_s$ and $Y_1, Y_2, ..., Y_t$ be strings over an alphabet $\Sigma$, where $s$ and $t$ are positive integers. The longest common subsequence and substring problem for multiple strings $X_1, X_2, ..., X_s$ and $Y_1, Y_2,…

Let $P(n,m)$ be a graph chosen uniformly at random from the class of all planar graphs on vertex set $\{1, \ldots, n\}$ with $m=m(n)$ edges. We study the cycle and block structure of $P(n,m)$ when $m\sim n/2$. More precisely, we determine…

Let $(X_n)_{n\ge 0}$ be an irreducible, aperiodic, and homogeneous binary Markov chain and let $LI_n$ be the length of the longest (weakly) increasing subsequence of $(X_k)_{1\le k \le n}$. Using combinatorial constructions and weak…

Maximal Common Subsequences (MCSs) between two strings X and Y are subsequences of both X and Y that are maximal under inclusion. MCSs relax and generalize the well known and widely used concept of Longest Common Subsequences (LCSs), which…

We consider the expected length of the longest common subsequence between two random words of lengths $n$ and $(1-\varepsilon)kn$ over $k$-symbol alphabet. It is well-known that this quantity is asymptotic to $\gamma_{k,\varepsilon} n$ for…

We provide a deterministic algorithm that outputs an $O(n^{3/4} \log n)$-approximation for the Longest Common Subsequence (LCS) of two input sequences of length $n$ in near-linear time. This is the first deterministic approximation…

We revisit the classic combinatorial pattern matching problem of finding a longest common subsequence (LCS). For strings $x$ and $y$ of length $n$, a textbook algorithm solves LCS in time $O(n^2)$, but although much effort has been spent,…

In this paper, the construction of finite-length binary sequences whose nonlinear complexity is not less than half of the length is investigated. By characterizing the structure of the sequences, an algorithm is proposed to generate all…

The nature of the alignment with gaps corresponding to a longest common subsequence (LCS) of two independent iid random sequences drawn from a finite alphabet is investigated. It is shown that such an optimal alignment typically matches…

Let $L_n$ be the length of the longest common subsequence of two independent i.i.d. sequences of Bernoulli variables of length $n$. We prove that the order of the standard deviation of $L_n$ is $\sqrt{n}$, provided the parameter of the…

We address a question and a conjecture on the expected length of the longest common subsequences of two i.i.d.$\ $random permutations of $[n]:=\{1,2,...,n\}$. The question is resolved by showing that the minimal expectation is not attained…

We improve Luczak's upper bounds on the length of the longest cycle in the random graph G(n,M) in the "supercritical phase" where M=n/2+s and s=o(n) but n^{2/3}=o(s). The new upper bound is (6.958+o(1))s^2/n with probability 1-o(1) as n…

Given a sequence of n numbers, the Maximum Consecutive Subsums Problem (MCSP) asks for the maximum consecutive sum of lengths l for each l = 1,...,n. No algorithm is known for this problem which is significantly better than the naive…