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Hydrogen and deuterium chemisorption on a single layer of graphene has been studied by path-integral molecular dynamics simulations. Finite-temperature properties of these point defects were analyzed in the range from 200 to 1500 K, by…

Materials Science · Physics 2015-05-13 Carlos P. Herrero , Rafael Ramirez

Developing a deep understanding of macroscopic mechanical properties of amorphous systems which lack structural periodicity, has posed a key challenge, not only at the level of theory but also in molecular simulations. Despite significant…

Soft Condensed Matter · Physics 2025-06-06 Vinay Vaibhav , Timothy W. Sirk , Alessio Zaccone

All-atom molecular dynamics simulations of an elastohydrodynamic lubrication oil film are performed to study the effect of pressure. Fluid molecules of n-hexane are confined between two solid plates under a constant normal force of 0.1--8.0…

Soft Condensed Matter · Physics 2018-05-29 Hitoshi Washizu , Toshihide Ohmori , Atsushi Suzuki

Atomic scale simulations are a key element of modern science in that they allow to understand, and even predict, complex physical or chemical phenomena on the basis of the fundamental laws of nature. Among the different existing atomic…

Materials Science · Physics 2021-07-20 Alexandre Boulle , Alain Chartier , Aurélien Debelle , Xin Jin , Jean-Paul Crocombette

Detailed calculations of the transport coefficients of a recently introduced particle-based model for fluid dynamics with a non-ideal equation of state are presented. Excluded volume interactions are modeled by means of biased stochastic…

Soft Condensed Matter · Physics 2010-12-06 Thomas Ihle

Numerical modelling of coherent spin relaxation in nanomagnets, formed by magnetic molecules of high spins, is accomplished. Such a coherent spin dynamics can be realized in the presence of a resonant electric circuit coupled to the magnet.…

Mesoscale and Nanoscale Physics · Physics 2009-11-13 V. I. Yukalov , V. K. Henner , P. V. Kharebov

We have implemented vibronic dynamics for simulations of the third order coherent response of electronic dimers. In the present communication we provide the full and detailed description of the dynamical model, recently used for simulations…

Chemical Physics · Physics 2017-08-31 Václav Perlík , František Šanda

We introduce a framework for model reduction of chain models for dissipative particle dynamics (DPD) simulations, where the characteristic size of the chain, pressure, density, and temperature are preserved. The proposed methodology reduces…

Soft Condensed Matter · Physics 2016-05-04 Nicolas Moreno , Suzana P. Nunes , Victor M. Calo

We report a computer simulation study of a model gel-former obtained by modifying the three-body interactions of the Stillinger-Weber potential for silicon. This modification reduces the average coordination number and consequently shifts…

Disordered Systems and Neural Networks · Physics 2015-05-27 Shibu Saw , Niels L. Ellegaard , Walter Kob , Srikanth Sastry

A proof-of-concept framework for identifying molecules of unknown elemental composition and structure using experimental rotational data and probabilistic deep learning is presented. Using a minimal set of input data determined…

Chemical Physics · Physics 2020-07-01 Michael C. McCarthy , Kin Long Kelvin Lee

In this paper, we present a unified framework to simulate non-Newtonian behaviors. We combine viscous and elasto-plastic stress into a unified particle solver to achieve various non-Newtonian behaviors ranging from fluid-like to solid-like.…

Graphics · Computer Science 2023-12-11 Chunlei Li , Yang Gao , Jiayi He , Tianwei Cheng , Shuai Li , Aimin Hao , Hong Qin

Although the notion of mechanical noise is expected to play a key role in the non-linear rheology of athermally sheared amorphous systems, its characterization has so far remained elusive. Here, we show using molecular dynamic simulations…

Soft Condensed Matter · Physics 2015-08-27 Francesco Puosi , Julien Olivier , Kirsten Martens

A dynamical lattice model is used to study the viscosity and the velocity-velocity autocorrelation function in a microemulsion phase. We find evidence of anomalous viscosities in these phases (relative to water-rich and/or oil-rich phases),…

Statistical Mechanics · Physics 2007-05-23 Songyun Qi , C. M. McCallum

A geometrically nonlinear continuum mechanical theory is formulated for deformation and failure behaviors of amorphous polymers. The model seeks to capture material response over a range of loading rates, temperatures, and stress states…

Materials Science · Physics 2026-02-10 John D. Clayton

The use of molecular dynamics (MD) simulations has led to promising results to unravel the atomistic origins of adhesive wear, and in particular for the onset of wear at nanoscale surface asperities. However, MD simulations come with a high…

Soft Condensed Matter · Physics 2022-06-29 Son Pham-Ba , Jean-François Molinari

The circumgalactic medium (CGM) is responsive to kinetic disruptions generated by nearby astrophysical events. In this work, we study the saturation and dissipation of turbulent hydrodynamics within the CGM through an extensive array of 252…

Astrophysics of Galaxies · Physics 2024-06-28 Alex Lv , Lile Wang , Renyue Cen , Luis C. Ho

The article considers the simulation of the formation of a multilayer nanocomposite, the combination of elements of which gives rise to the effect of a spin valve. The relevance and importance of the effects in the field of spintronics and…

Superconductivity · Physics 2022-08-18 A. V. Vakhrushev , A. Yu. Fedotov , Yu. B. Savva , A. S. Sidorenko

Long, elastic filaments cross-linked and deformed by active molecular motors occur in various natural settings. The overall macroscopic mechanical response of such a composite network depends on the coupling between the active and the…

Biological Physics · Physics 2015-01-13 Raghunath Chelakkot , Arvind Gopinath , L. Mahadevan

The rheology of cohesive granular materials, under a constant pressure condition, is studied using molecular dynamics simulations. Depending on the shear rate, pressure, and interparticle cohesiveness, the system exhibits four distinctive…

Soft Condensed Matter · Physics 2018-09-26 Yuta Yamaguchi , Satoshi Takada , Takahiro Hatano

Multiple time scale molecular dynamics enhances computational efficiency by updating slow motions less frequently than fast motions. However, in practice the largest outer time step possible is limited not by the physical forces but by…

Statistical Mechanics · Physics 2011-01-13 Joseph A. Morrone , Thomas E. Markland , Michele Ceriotti , B. J. Berne
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