Related papers: Cloudbreak: Accurate and Scalable Genomic Structur…
Hadoop and Spark are widely used distributed processing frameworks for large-scale data processing in an efficient and fault-tolerant manner on private or public clouds. These big-data processing systems are extensively used by many…
MapReduce is a programming system for distributed processing large-scale data in an efficient and fault tolerant manner on a private, public, or hybrid cloud. MapReduce is extensively used daily around the world as an efficient distributed…
As a pivotal branch of machine learning, manifold learning uncovers the intrinsic low-dimensional structure within complex nonlinear manifolds in high-dimensional space for visualization, classification, clustering, and gaining key…
Fast and cheaper next generation sequencing technologies will generate unprecedentedly massive and highly-dimensional genomic and epigenomic variation data. In the near future, a routine part of medical record will include the sequenced…
Graph clustering and community detection are central problems in modern data mining. The increasing need for analyzing billion-scale data calls for faster and more scalable algorithms for these problems. There are certain trade-offs between…
We develop a Vector Quantized Spectral Clustering (VQSC) algorithm that is a combination of Spectral Clustering (SC) and Vector Quantization (VQ) sampling for grouping Soybean genomes. The inspiration here is to use SC for its accuracy and…
Graph embedding provides a feasible methodology to conduct pattern classification for graph-structured data by mapping each data into the vectorial space. Various pioneering works are essentially coding method that concentrates on a…
Subgraph counting aims to count occurrences of a template T in a given network G(V, E). It is a powerful graph analysis tool and has found real-world applications in diverse domains. Scaling subgraph counting problems is known to be memory…
In Search Based Software Engineering, Genetic Programming has been used for bug fixing, performance improvement and parallelisation of programs through the modification of source code. Where an evolutionary computation algorithm, such as…
Spectral clustering is a powerful technique for clustering high-dimensional data, utilizing graph-based representations to detect complex, non-linear structures and non-convex clusters. The construction of a similarity graph is essential…
Causal structure learning refers to a process of identifying causal structures from observational data, and it can have multiple applications in biomedicine and health care. This paper provides a practical review and tutorial on scalable…
Applications such as web search and social networking have been moving from centralized to decentralized cloud architectures to improve their scalability. MapReduce, a programming framework for processing large amounts of data using…
Graph convolutional networks (GCNs) allow us to learn topologically-aware node embeddings, which can be useful for classification or link prediction. However, they are unable to capture long-range dependencies between nodes without adding…
We propose a new approach for clustering DNA features using array CGH data from multiple tumor samples. We distinguish data-collapsing: joining contiguous DNA clones or probes with extremely similar data into regions, from clustering:…
Node embedding refers to techniques that generate low-dimensional vector representations of nodes in a graph while preserving specific properties of the nodes. A key challenge in the field is developing scalable methods that can preserve…
Cracks play a crucial role in assessing the safety and durability of manufactured buildings. However, the long and sharp topological features and complex background of cracks make the task of crack segmentation extremely challenging. In…
We consider detection and localization of an abrupt break in the covariance structure of high-dimensional random data. The paper proposes a novel testing procedure for this problem. Due to its nature, the approach requires a properly chosen…
Current point cloud segmentation architectures suffer from limited long-range feature modeling, as they mostly rely on aggregating information with local neighborhoods. Furthermore, in order to learn point features at multiple scales, most…
This paper presents a framework to address the challenges involved in building point cloud cleaning, plane detection, and semantic segmentation, with the ultimate goal of enhancing building modeling. We focus in the cleaning stage on…
The proliferation of high-dimensional data from sources such as social media, sensor networks, and online platforms has created new challenges for clustering algorithms. Multi-view clustering, which integrates complementary information from…